Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00426 ATGCCTGCAACTCTAAGGAATTTCAATCTCTTTCTTTCCCCCAATATCTTCTTAATCACCCTTCTTCTTTGCATTAACTCCCTCTTCTTTCCTTGTGGTTACTCCCTTGACGAACAGGGGCAGATACTTCTTGCATGGAAAAACAGTTTAAACAGCTCGACGGAAGCTCTCAACTCATGGAATCCATCAGACCCAAGTCCATGCAACTGGTTTGGAGTCACCTGCGACAAAAGATTTGTAGTCAAAATAAGTCTCAGGTCACTGGATTTGCAGGGTTTTCTGCCTTCAAATTTCCATTCTCTCAAGTTTTTGAATTCAATTACCCTCACCTCAACCAATCTTTCCGGACCAATTCCAAAAGAATTTGGAGAATATCGTGCGCTCAGCTACATTGATCTGAGCGACAATTCCATTTCAAGTGAAATCCCATATGAAATATGCAGACTACCCAAACTACAGAGTCTATACCTTAGTGGGAACTTTCTTGAAGGCAAAATTCCTTCAGATATAGGGAATCTTTCAAGTTTAATGCAGCTGACACTCTTTGACAATCAACTTAATGGGGAAATTCCAAAAAGCATTGCAGCACTTAGCAAACTGCAAATTTTCAGAGCTGGGGGGAACAAAAATCTGAAGGGTGAGTTGCCATGGGAGATAGGAAATTGCAGCAACTTGGTTATATTAGGCCTTGCCGAAACAAGCATTTCAGGGGCTCTCCCTTCCTCCATTGTAATGCTGAAAAGACTACAAACAATTGCCATTTACACATCTCTATTATCTGGTTCCATTCCAGAAGATATTGGAAACTGCAGCGAGCTGCAGAATCTGTACTTGTATCAGAATTCCATTTCTGGTTCAATTCCCAGAAGTTTAGGTAAGCTGAGAAAGCTTCAGAATCTCCTGCTATGGCAGAACAGCTTGGTTGGTTCAATTCCAGACGAGATTGGTTTTTGCAGAGAGCTTCTTTTCATTGACTTTTCTGAAAATTTTATCACTGGAAGAATTCCAAGAAGTTTTGGCGAGCTACCCAAACTCGAAGGGCTTCAACTGAGTGTTAATATTATTTCAGGTACTATTCCATCTGAGCTCACCAATTGTACAGCTCTCACACATCTGGAAATCGATAACAATGATATTTCTGGTGGCATACCTCTTCTTATTGGCAATCTCAAGAGATTGATCATTTTCTTTGCCTGGCAGAATAATCTAACGGGTACTATTCCTGAAACTCTCGGTGATTGCCAAGATCTTCAGGCTCTTGATCTCTCTTACAACAATCTCATCGGTTCTGTTCCAAAACAGATATTTGGATTGAAAAATCTCACTAAGATCCTCCTAATTTCAAATGATTTGTCTGGCTTTATAACTCCTGATATAGGAAACTGTACAAATCTGTACAGGTTTCGGTTAAATGGAAATAGAATTGGAGGCACTGTTCCATCAGAGATCGGAAAGTTGAAAGTCCTAAATTTTGTTGACTTGAGCAGTAACCATCTTGCCGGAGAAATTACTCCGTCCATATCCGGATGTAAAAACCTCGAGTTTCTTGATCTCCATTCAAATTGGCTCACTGGGTCTGTGCCTGATAACTTGCCCACTACTCTGCGGGTTGTGGACATCTCAGACAATAGGCTGACTGGTGAGCTCTCTCATGAAATTGGGTTGTTAACTGAATTAGCAAAACTCAACTTAGAAAACAACCAACTTTCCGGCAGACTTCCTGCAGAGATTCTTTCTTGCAGTAAGCTGCAACTTTTGAACGTTGGAAACAATGGCTTCTCCGGTGTAATTCCAAAGGAACTGGGTCAAATACCATCACTGGAAATCTCCCTCAATCTGAGCTGTAACCAACTTTCCGGTGAGATCCCAGCTCAATTTTCCAGCCTCGACAAGCTAGGAGTTCTTGACCTTTCCCGTAACCAGCTATGTGGAAACTTAAGCGTTCTTGCGCAACTTCAGAACCTTATCTCATTGAATATTTCCTTCAATGACTTCTCAGGTGAATTGCCAGATACCCCATTTTTTCGTAACCTCCCTCTTAGTGACATCACTGGAAACAAAGGTCTGTCCATGTCCGGAAGAACTGTAACTCCGGCCGACAAGATGTCTTCACCAGCAGAAGCAGATCAGTCATGA 2136 41.62 MPATLRNFNLFLSPNIFLITLLLCINSLFFPCGYSLDEQGQILLAWKNSLNSSTEALNSWNPSDPSPCNWFGVTCDKRFVVKISLRSLDLQGFLPSNFHSLKFLNSITLTSTNLSGPIPKEFGEYRALSYIDLSDNSISSEIPYEICRLPKLQSLYLSGNFLEGKIPSDIGNLSSLMQLTLFDNQLNGEIPKSIAALSKLQIFRAGGNKNLKGELPWEIGNCSNLVILGLAETSISGALPSSIVMLKRLQTIAIYTSLLSGSIPEDIGNCSELQNLYLYQNSISGSIPRSLGKLRKLQNLLLWQNSLVGSIPDEIGFCRELLFIDFSENFITGRIPRSFGELPKLEGLQLSVNIISGTIPSELTNCTALTHLEIDNNDISGGIPLLIGNLKRLIIFFAWQNNLTGTIPETLGDCQDLQALDLSYNNLIGSVPKQIFGLKNLTKILLISNDLSGFITPDIGNCTNLYRFRLNGNRIGGTVPSEIGKLKVLNFVDLSSNHLAGEITPSISGCKNLEFLDLHSNWLTGSVPDNLPTTLRVVDISDNRLTGELSHEIGLLTELAKLNLENNQLSGRLPAEILSCSKLQLLNVGNNGFSGVIPKELGQIPSLEISLNLSCNQLSGEIPAQFSSLDKLGVLDLSRNQLCGNLSVLAQLQNLISLNISFNDFSGELPDTPFFRNLPLSDITGNKGLSMSGRTVTPADKMSSPAEADQS 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5445047 5447182 + Bda025521.1 Bda07g00426 9316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 532 609 IPR032675 -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 146 245 IPR032675 -
Bda07g00426 711 SUPERFAMILY RNI-like 287 649 - -
Bda07g00426 711 MobiDBLite consensus disorder prediction 689 711 - -
Bda07g00426 711 Pfam Leucine rich repeat 399 451 IPR001611 GO:0005515
Bda07g00426 711 Pfam Leucine rich repeat 104 160 IPR001611 GO:0005515
Bda07g00426 711 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 698 - -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 432 531 IPR032675 -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 321 431 IPR032675 -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 610 696 IPR032675 -
Bda07g00426 711 SMART LRR_typ_2 149 173 IPR003591 -
Bda07g00426 711 SMART LRR_typ_2 294 318 IPR003591 -
Bda07g00426 711 SMART LRR_typ_2 486 510 IPR003591 -
Bda07g00426 711 SMART LRR_typ_2 556 580 IPR003591 -
Bda07g00426 711 SMART LRR_typ_2 414 438 IPR003591 -
Bda07g00426 711 SUPERFAMILY RNI-like 83 393 - -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 246 320 IPR032675 -
Bda07g00426 711 Gene3D Ribonuclease Inhibitor 38 145 IPR032675 -
Bda07g00426 711 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Bda07g00426 711 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 698 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00426 - - - egr:104452161 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00426 Bda-Chr7:5445047 Bda08g00023 Bda-Chr8:199686 0 dispersed
Bda07g00426 Bda-Chr7:5445047 Bda09g00445 Bda-Chr9:5862398 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g725 . . Bda07g00426 . . . . . . . . Cma09g01031 . Car09g00936 . . . Bhi09g01815 . . . . Mch11g1310 . . . . . . . . . . . . Lsi02g01803 Csa07g01065 . . . . . . . . . . . . Cmo09g01033 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032264 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00426 Bda_Chr07 FPKM 1.222024 1.405622 1.510927 1.585283 2.863163 3.103038 3.240854 1.36409 1.792031