Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00429 GAATTTGTAAACCTGGAAAAGCACCGGGAGGACTACTGCTTCGACGGGATATTTGGCTGCATCCATGAAATCACGGCAGCCCTTGCTTTCGCTAGGATGAGTGATTCTGCCTACAGAGTTGACACCACTTCCCGTCTCGCTCAATGGAGGGTCGAAAATCTGGCTTCCTGTACGTACCGCAAATCAGACCCCTTCAAAATCGGCAAGTGGAATTGGCATTTATCTTTGGAGAAAAATCGGCTTCTGTTCATCAAATTGTACCCGGAGATATCAAATTTAACCAGAGACAGTCCTCCGATTGCATCTTTCATCATCCGAGTAGTCTGTTCGGTTGGAGATCGGAAATCCTTGACTCATCCCGAAATTATAGACAAACAGCTGAAGAACAACGATGATTTTGTTTGGGCGATCGAGGTTCCACTGACTGGAAAATTCATCATCGACGTTCAATTCCTTGACTTGAAAACTCCATCCCCAGACGGAGGGGAAGCTCGTTCCATCTGGGCAGAAGGGTTCACAAAGGAACAATCAAATGCATCAGCTCTTTCTTCTTTGTCGAGAATGTTGACAGAAGGCATCCACACAGACATTGTCATCAATGCTTCCGACGGAAGCATTGGAGCCCATCGTGCAATTCTCGCTGCAAGATCTCCTGTTTTCCAAAGCATGTTTGTGCATAATCTAAAAGAGAAAGAGCTTTCCACCATTAACATCTCAGACATGTCAATTGAAGCTTGTCAGGCTTTTCTCAGTTACATTTATGGGAACATCGAGCACGAAGAATTTCTTACCCATCGGCTAGCACTTCTTCGGGCAGCTGACAAATATGACATCTCCGACCTCAAACAGGCATGCCATGAGAGTTTATTAGAAGACATTGATGCTAAAAATGTCCTGGAGAGACTTCAAAATGCAAACCTATATCAATTGCCACAGCTGAAAGCCAGCTGCATGAGATATCTTGTCAAGTTTGGCAAGATTTTCGACATTAGAGATGATTTCAACCTCTTCTTGCACAGTGCAGACAGAGAGCTGCTTTCTGAGATCTTCCAGGAAATTCTCAATGTCTGGAAGGGGTTCTAA 1083 44.51 EFVNLEKHREDYCFDGIFGCIHEITAALAFARMSDSAYRVDTTSRLAQWRVENLASCTYRKSDPFKIGKWNWHLSLEKNRLLFIKLYPEISNLTRDSPPIASFIIRVVCSVGDRKSLTHPEIIDKQLKNNDDFVWAIEVPLTGKFIIDVQFLDLKTPSPDGGEARSIWAEGFTKEQSNASALSSLSRMLTEGIHTDIVINASDGSIGAHRAILAARSPVFQSMFVHNLKEKELSTINISDMSIEACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDISDLKQACHESLLEDIDAKNVLERLQNANLYQLPQLKASCMRYLVKFGKIFDIRDDFNLFLHSADRELLSEIFQEILNVWKGF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5486753 5488319 + Bda025525.1 Bda07g00429 9319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00429 360 PANTHER OS08G0495500 PROTEIN-RELATED 33 360 IPR044714 -
Bda07g00429 360 Gene3D Potassium Channel Kv1.1; Chain A 170 323 IPR011333 -
Bda07g00429 360 Pfam BTB/POZ domain 187 291 IPR000210 GO:0005515
Bda07g00429 360 ProSiteProfiles BTB domain profile. 195 254 IPR000210 GO:0005515
Bda07g00429 360 SUPERFAMILY POZ domain 179 291 IPR011333 -
Bda07g00429 360 CDD BTB_POZ_ZBTB_KLHL-like 194 276 - -
Bda07g00429 360 SMART BTB_4 195 293 IPR000210 GO:0005515
Bda07g00429 360 PANTHER OS08G0495500 PROTEIN 33 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00429 K10523 SPOP; speckle-type POZ protein - cit:102607532 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00680 Bda-Chr1:33974031 Bda07g00429 Bda-Chr7:5486753 1.27E-12 dispersed
Bda03g00547 Bda-Chr3:4551633 Bda07g00429 Bda-Chr7:5486753 4.04E-12 dispersed
Bda07g00429 Bda-Chr7:5486753 Bda07g00792 Bda-Chr7:9448474 1.19E-10 dispersed
Bda07g00429 Bda-Chr7:5486753 Bda01g01442 Bda-Chr1:50327444 1.66E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g755 . . Bda07g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01024 Cme01g01105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007616 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16100 PF00651 BTB 7.30E-23 CL0033 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00429 Bda_Chr07 FPKM 7.919753 9.255046 14.154562 14.66312 7.997758 7.757543 8.811257 14.677039 11.562391