Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00455 ATGTATGTTGAGGAAATGAAGAGAGGGGAGGTGGAGAGTGGAGGAGAGGGAAATTTGAACGATGGAGATTGTAATTTTGTGAGCCAGAGCGTTGATGTTTCAGAGACGAAAAGAGTTTTGATTGGAGCTGGAGCTCGCGCTCTCTTCTACCCAACTCTGCTTTACAATGTTCTTAGGAATAAAATTCAGACTGAATTCCGGTGGTGGGATAGGGTTGATCAGTTTATACTGCTAGGTGCTGTTCCATTTCCCACTGACATACCCTGCTTGAAGGAGCTAGGTGTTCGGGGGGTCATCACACTGAATGAGCCGTATGAGACTTTGGTTCCAACAACCTTATATCAGGCTCATGGCATAGATCATCTGGTTATTCCTACCAGAGACTATTACTTTGCACCTTCATTAAGTAACATCATTCAGGCTCTGGATTTTATTCATGAAAACTCATTGCATGGTCGAAGTACCTATGTTCACTGTAAAGCGGGAAGAGGACGCAGCACTACTATAGTGATCTGCTACTTGGTGCATTATAAGCAGATGACACCAAATGACGCCTATAGTTACGTCAGATCAATTAGGCCAAGGGTGCTTTTAGCATCTTCCCAGTGGCAGGCTGTCCAGGAATTCTACTACCTTAATGTCAAGAAGACAGTCGTGTACAGTCGTCTGACAAATCTCCTAACGAAAGTGCCAATGTCATTAGTGGCAAAAGATGTTGCATTTGATGATGGGTCCGTTGTTTTAGTAACAAAATCTGATCTCAATGGTTATGAAGAGAGTCTGGAGTCAAGGTCGGAGCAAAGTGAGATATGGGCAGATATTGGTGTTGTTTATCGGGTTCGAATTGTTCGTCAGGCTGCTATGGCCAGGATATCTTGTCTCTGGCTCCGATGCTGCACTCACCACCAGAAAAGCAAACTCATTGACAACAGTGGCTGCACAATCAGTGCTGCTCATCTCGAAGGCATAAGTATGGATATCCATGTTTACTGA 993 44.21 MYVEEMKRGEVESGGEGNLNDGDCNFVSQSVDVSETKRVLIGAGARALFYPTLLYNVLRNKIQTEFRWWDRVDQFILLGAVPFPTDIPCLKELGVRGVITLNEPYETLVPTTLYQAHGIDHLVIPTRDYYFAPSLSNIIQALDFIHENSLHGRSTYVHCKAGRGRSTTIVICYLVHYKQMTPNDAYSYVRSIRPRVLLASSQWQAVQEFYYLNVKKTVVYSRLTNLLTKVPMSLVAKDVAFDDGSVVLVTKSDLNGYEESLESRSEQSEIWADIGVVYRVRIVRQAAMARISCLWLRCCTHHQKSKLIDNSGCTISAAHLEGISMDIHVY 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5872294 5875506 - Bda025556.1 Bda07g00455 9345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00455 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
Bda07g00455 330 SMART ptp_7 110 221 IPR003595 -
Bda07g00455 330 CDD PTPMT1 68 210 IPR044596 GO:0004721
Bda07g00455 330 Pfam Dual specificity phosphatase, catalytic domain 88 209 IPR000340 GO:0008138|GO:0016311
Bda07g00455 330 PANTHER - 1 330 - -
Bda07g00455 330 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Bda07g00455 330 Gene3D Protein tyrosine phosphatase superfamily 68 216 IPR029021 -
Bda07g00455 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 213 IPR029021 -
Bda07g00455 330 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 330 - -
Bda07g00455 330 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Bda07g00455 330 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00455 - - - zju:107430324 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02034 Bda-Chr1:56631957 Bda07g00455 Bda-Chr7:5872294 2.28E-99 dispersed
Bda07g00455 Bda-Chr7:5872294 Bda14g00209 Bda-Chr14:1448520 1.86E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda11g00846 . 23 333 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 9.7e-123 436.8
Bda15g00697 . 6 900 Protein tyrosine phosphatase (PTP) family AT5G23720 61.1 1.7e-299 1025.4
Bda03g01256 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.4 2.3e-40 162.2
Bda14g01416 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 2.4e-72 268.5
Bda14g00375 . 17 293 Protein tyrosine phosphatase (PTP) family AT3G52180 70.3 4.0e-114 407.9
Bda14g00209 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.6 3.7e-112 401.4
Bda01g01276 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 7.1e-198 686.8
Bda14g01411 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 53.7 9.7e-67 250.4
Bda13g01849 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.6 4.8e-50 194.9
Bda15g00865 . 35 142 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 8.6e-39 157.5
Bda07g00455 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 56.7 2.5e-99 359.0
Bda01g02034 . 6 269 Protein tyrosine phosphatase (PTP) family AT2G35680 51.7 6.1e-77 284.6
Bda01g02034 . 27 200 Protein tyrosine phosphatase (PTP) family AT5G56610 53.4 4.5e-45 177.9
Bda14g01411 . 35 209 Protein tyrosine phosphatase (PTP) family AT4G03960 66.3 1.8e-68 255.8
Bda13g01849 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.1 3.6e-53 204.9
Bda15g00865 . 24 142 Protein tyrosine phosphatase (PTP) family AT4G03960 60.5 3.3e-38 155.2
Bda13g01849 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 3.1e-84 308.1
Bda14g01411 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 59.5 1.9e-57 219.2
Bda15g00865 . 30 142 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 9.8e-38 153.7
Bda14g00109 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 61.4 2.3e-55 214.2
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda14g01451 BCT 32 615 Protein tyrosine phosphatase (PTP) family AT3G19420 66.8 5.1e-223 770.8
Bda15g00847 BCT 32 608 Protein tyrosine phosphatase (PTP) family AT3G19420 65.9 7.8e-216 746.9
Bda10g00214 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.5e-187 651.4
Bda10g00247 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.9e-186 647.9
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda07g00669 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.2 1.5e-75 279.6
Bda06g01290 . 10 276 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 9.4e-101 363.6
Bda05g00942 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 69.9 9.3e-287 982.6
Bda05g00942 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.3e-261 899.0
Bda05g00942 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.6 3.9e-186 648.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008293 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00455 Bda_Chr07 FPKM 13.985525 13.720179 4.779659 5.937241 6.751924 6.527952 5.113343 0.0 0.654735