Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00458 ATGGAGAGCCGATTGGTCGAGATGTGCATCGACTCGGCGTGCCGGAGCAGAGTTAGCATCGACAAATGGCGCAGGCAGACGCGGACCCTTCACCGCCTCCCCTCTCACCTTGCAGATGAGCTCCTTCGCCGCCTTCATACTCGTCGTCTGCTTTACCCCTCTTTGCTGGAAATCTTCAAATTTAGTGTAGAAGAGATAAATTTCGGTGGTGATAATGCTGTGGATGCAGAATGGATGGCCTACTTGGGAGCTTTTTCCGCACTACGATATCTGAATCTTGCCGACTGCCATAGAATTACTAGTTCTGCTCTTTGGTCTATATCAGGGATGGCTAGTTTGAAAGAGCTAGACCTTTCGAGATGTCTCAAGTTTACTGATGCTGGAATTATGCATCTTCTATCCGTATCAACTCTAGAAAAGCTATCCATTTCAGAAACACGTGTAACCTCACATGGTATTAAGCTTCTTGCTTCTCTGAAAAACTTGAGTTTCTTGGACTTGGGTGGTTTGCCTGTTACAGATCAAACTTTGAGTTATCTTCAGGTCCTTACAAACCTCAAGTACCTCGATGTATGGGGAAGTAAAATAACTGATCAAGGATCTATTGTCCTTCCAAAGTTTACAATGTTAAGCTTCCTGAATCTTGCTTGGACTAGCGTCACACAGTTGCCAAAATTGCCTTCTCTTAAAATCTTGAACATGAGCCATTGTACAATTAACTCTTCACAGAAAGGGTTTTGTAACAAAGTTCCTTTACAGAAGCTTATTGTCACTGGAGCAACATTTATAAATGAGGATGAAATTTTGGGAAGTATTGAAGCCATTTCTCTATATATTCTGGATGTCTCAAACTCTTCCCTTCGTAGTTTCTCATTCTTACCTCAGATGAAAGCTCTGCAACACTTGGATCTTAGCTCTACCATGATCGAAAATGATTCAATGGAACTCCTTGCATTTGTAGGAGCTAGTTTGAAAACCTTAAATCTCAGCAACACCAAGGTTAATTCCCTGGGAGTCGCGCTTTTGGCTGGAGAAGTACCAAATCTCGAAACTATATCATTAGCGCACACACCAATTGATGACACAGCAATCATATGTGTCAGCAGGATGCCCTCTCTGAAGGCTATAAACTTAAACAGTACTAACATCAAAGGTAACACTTTTGATTCTAAACCATTGATGAAACTTTTGCGGTTTTATTATATTCCTCATTATGTTTTGACAGGTATAATTCCTCAGTATGGTACCGAGCCAGAATATCTATCCTTTACTGCTCTACAAGAGCTTAGATGTTTAGAAGTGTTAAATTTGGAGCAGACTCAAGTTAGGGATGGAGCCTTATGCGCTTTATCAAGTCTTAGAGAATTGCGTAACGTCAGTCTTAAAAGTGCTTCTCTTACTGACAGCGCCCTTTACTATTTGTCATCTATCCCAAAGCTAGCTAGTCTCGGCATTCGAGATGCAGTAGTGACAAATTCTGGGCTTGATTTGCTGAAGCCCCCATCCACCTTAATGAAAATGGATTTGAGGGGCTGTTGGCTCTTGACTAGGGATGCAATATTGGCATTTGGTAGGAGGTTTCCTCAAATCCAAGTGATGCATGAGCTTACTCATCTCTCCCCATCTACTCACACTGGGCACTCTAATAGCACTAGATTTTCTTCAAGGATTTCAAAAGTGAAGGAGAAGAATAGAGATATACAAATCTCACAGAGTTTTATAGATCAAAGATTAAAATATAACAGGGGAGAGTTGCTTGCACTGCAGTACTCGTCTGAATGTCCCATATCCATCAATGCTAGAGCTGCCTTACTGGATGAGATGGAATCAGGATTACATTCTGGTGAATTCTAA 1854 41.48 MESRLVEMCIDSACRSRVSIDKWRRQTRTLHRLPSHLADELLRRLHTRRLLYPSLLEIFKFSVEEINFGGDNAVDAEWMAYLGAFSALRYLNLADCHRITSSALWSISGMASLKELDLSRCLKFTDAGIMHLLSVSTLEKLSISETRVTSHGIKLLASLKNLSFLDLGGLPVTDQTLSYLQVLTNLKYLDVWGSKITDQGSIVLPKFTMLSFLNLAWTSVTQLPKLPSLKILNMSHCTINSSQKGFCNKVPLQKLIVTGATFINEDEILGSIEAISLYILDVSNSSLRSFSFLPQMKALQHLDLSSTMIENDSMELLAFVGASLKTLNLSNTKVNSLGVALLAGEVPNLETISLAHTPIDDTAIICVSRMPSLKAINLNSTNIKGNTFDSKPLMKLLRFYYIPHYVLTGIIPQYGTEPEYLSFTALQELRCLEVLNLEQTQVRDGALCALSSLRELRNVSLKSASLTDSALYYLSSIPKLASLGIRDAVVTNSGLDLLKPPSTLMKMDLRGCWLLTRDAILAFGRRFPQIQVMHELTHLSPSTHTGHSNSTRFSSRISKVKEKNRDIQISQSFIDQRLKYNRGELLALQYSSECPISINARAALLDEMESGLHSGEF 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5901795 5904853 - Bda025559.1 Bda07g00458 9348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00458 617 SUPERFAMILY RNI-like 66 397 - -
Bda07g00458 617 Gene3D Ribonuclease Inhibitor 147 400 IPR032675 -
Bda07g00458 617 Pfam Leucine Rich repeat 112 132 IPR001611 GO:0005515
Bda07g00458 617 Gene3D Ribonuclease Inhibitor 11 146 IPR032675 -
Bda07g00458 617 PANTHER RECEPTOR-LIKE PROTEIN 14 392 608 - -
Bda07g00458 617 PANTHER RECEPTOR-LIKE PROTEIN 14 1 388 - -
Bda07g00458 617 SMART LRR_CC_2 159 183 IPR006553 -
Bda07g00458 617 SMART LRR_CC_2 85 109 IPR006553 -
Bda07g00458 617 SMART LRR_CC_2 346 370 IPR006553 -
Bda07g00458 617 SMART LRR_CC_2 453 477 IPR006553 -
Bda07g00458 617 SMART LRR_CC_2 110 135 IPR006553 -
Bda07g00458 617 SMART LRR_CC_2 226 245 IPR006553 -
Bda07g00458 617 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 392 608 - -
Bda07g00458 617 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 1 388 - -
Bda07g00458 617 Gene3D Ribonuclease Inhibitor 407 592 IPR032675 -
Bda07g00458 617 SUPERFAMILY RNI-like 423 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00458 - - - qsu:112023903 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00818 Bda-Chr4:58056396 Bda07g00458 Bda-Chr7:5901795 2.52E-14 dispersed
Bda07g00458 Bda-Chr7:5901795 Bda11g00828 Bda-Chr11:8199078 1.11E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00458 Bda_Chr07 FPKM 1.741566 0.974144 2.635455 3.042618 5.560302 3.505855 5.542658 2.190777 2.491323