Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00466 ATGGAGGACAATGTGGTTGAGGATTTAACCCCGATGGACACTGTGGACGGTGGACATCTCCTAAACAAAGGTAGGCCAGAGGCGCCCCTGGAGAGCATGTATGCGCAAAAACCTGAAGCCTGTAACATTTTGGGATCTCAAGAAATGCTTATACCTGTTGAAGGTGGGAATTGTCCTCGTGAATTAGAGGGATTCTTGGATGGTAAGACCGTGATTAGGAGTGATAACCACATGGATGCATCAGAACACCCATTTTCCATCCCCCGCTGCATGGATGATGCTGGTGTTATGGTTGAAGAATTAACTGTAAAAAATTATGATGGTTCAAATTTAGCTATTGTTGGCACATCAAATAATAGGGGGAGAATGCTTACTAGGCAGAACCAGTGGCAACAGCTATATCAGCTGGGAAATGGATCAGGAAGTGGGTGTATTCACAATGAGACTCCATACAAGGACACTGGTCAGGCGATGTCAAGTGGTTTCGAGGATGTTGGATACTCGACTTTTTCTGAATTTTTGGCTCAAAAAGCAATTACTGAGAGTTGTGGTGAGGACCTTGAAGAATTTGTAAATACTGAAAATAAAGTGGTTTTAGGGAACACTCATGGTGCCGTGCGAACTAAGATTATATCGAAATCAGGTTTCTCTGAGTTTTTTGTCAAGAAGACACTGAAGGGTAAGGGCATTATGCAAAGGGGCCCGCTTCATTCAGGTTTCAATGTTGAGCCTAGAAACAAGAAAAGTCCAAAGGCTGATAGTGGTATTATAGTGGCTTCTACGTCATTACAACCTAATTTTAAAAATGTTACAGCCTCTCCATGTGTGAAATCTGAGCCAAAAGTCTGTAGCTCTGCTATTGGAGTTAGTCTACAAGAATGGCTAAAAGTTGGCCATAAAAAGGTGAATAAACTCGAGCGCTTGAATATATTTAAGCAGATTTTGGAACTGCTGGATCATGCTCACTCTCAAGGAGTTGTTTGGCATGACATACGGCCATCTTCCTTCAGGCTATTAGCTTCAAATCAGGTCAAGTATAATGGGGCGGCTATCCAAGAAGAGATGAGAGAAAGTTCTATGGATGGAGATTTTCAGTACTTGGGGAAGAATTTGATAAAGAAAAGACTAGAGCAGGGAGCATTTCCTTCATTACATGAAACTTTAAGAAAGAAAAAGTTCATTCAGAATACAAACTATTTGGAAAAGCTACCTCAAACTAATTTGACATCTGGCATTGGACTTGAAATTGGAAATTCTTCTAGCAAATTGGGTACTCATGGGAATCGAAGCAAGTATACTGGACTTTGTTCCGTTAATTCTGGTCATCTGAATCTAGCAAGTGAGCACTTGGAAGAAAACTATTATGTAAGTCCTGAGGAACTCAATGGTCATGGGCGCACAACTTCTTCAAACATATACTCTCTGGGTGTCCTCTTTTTTGAGTTGCTTGGCGATTTTGACTTTGATGGTGCACGTGTTGCTGCATTGTCTGATTTACGTCATAGAATTCTGCCTCCAAATTTTTTGTCAGAAAATCCACGGGAAGCTGGATTTTGCCTTTGGCTGCTTCATCCTGAACCTGCATCTCGACCCTCAACACGGAAAATTTTAGAATATGAAGTAATGATATTATCTCCACCAGCATCTACAGAAGAATTGCCATCGTCCCTTGATCAAGATGGTACAGAATCTGAATTATTGTTGCAATTTCTCGTTTCTTTACAAGAACAGAAGCAGAAGCGTGCGGCAAAGTTACTGGAAGACAATCAGAGCTTAGAAGCAGACATAGAAGAAATTCAAAGAAGGCACAGTTCGAACAAATCCTATTCGCATACTGACTCCTTCAATGAAATGGAGAAATGTATGGTTTGGAAAGCAAATTCAAGATTTGATATGGTTTCTCAGCTGTCTGTTTTTCCTAATACCACTGAGATGAGGTTTGAAAAGAATATCTGCCAGCTTGAAACTGCATACTTCTCAGCGAGATCCAAAGTTCAGCTTCCTGAGAATGATTCAGTTGTACGAACAGACATTGGTTTGTTGAGAACTCGGGAGAACTGCAATCAGGCATGGCCAAGTGAAGAGAAAACGCGTCCTATGGATTACTTGGGAGATTTTTTTGATGGCTTTTGCAAGTATTCTCGCTATAGTAAATTTGAAGTGCGTGGAACATTAAGAAATTCAGATTTCAACAGCTCTTCCAATGTGATTTGTTCATTGAGTTTTGATCGTGATGGGGACTATTTTGCAGCTGCGGGAGTGTCGAAGAAAATAAAAATATTTGGCTTTAACGCAGTCTTTAATAACTTGGTTGATATTCATTATCCAGCTGTTGAGATGATGAACAAATCAAAGCTCAGCTGCGTTTGCTGGAACAACTATATTAAGAACTATCTGGCTTCAACTGATTATGATGGTGCAGTCAAGTTATGGGATGCATCCACAGGGCAAGAGACTTCTCAATACAAGGAACATGAAAGGAGGGCCTGGTCTGTCGACTTTTCTCAAAAAAATTCGTTAGGCACAATCAGGAACATTGCAAATGTATGCTGTGTTCAGTTCTCTGCTCACTCTACTCATTTGCTGGCGTTTGGGTCTGCTGATTACCGAACCTATTGCTATGATCTTAGGAATACTAAAGCTCCATGGTGTATATTGGGTGGTCATGGCAAAGCTGTAAGCTATGTGAAATTCTTGGACTCTGAGACCCTTGTTTCTGCCTCTACTGACAGCACTCTGAAGCTATGGGATCTCAACCGAACAAATCCTTGTGGCTTGTCCACCAACGCCTGCAATTCAACTCTCAGCGGGCACACTAATGAGAAGAACTTTGTGGGTTTGTCCGTTTCTGATGGTTATATCGCTTGCGGATCTGAGACAAATGAGGTTTGCGCTTACTATCGATCTCTTCCCATGCCGATCACCTCCCTTAAGTTTGGCTCGATAGACCCAGTTTGTGGGAAGGAAACTGATGATGACAACGGACAGTTTGTTTCCAGCGTTTGCTGGAGAGGAAAATCTGACATGCTTATCGCAGCCAATTCAAGTGGCTGTATAAAAGTGTTGCAAATGGTTTGA 3078 41.49 MEDNVVEDLTPMDTVDGGHLLNKGRPEAPLESMYAQKPEACNILGSQEMLIPVEGGNCPRELEGFLDGKTVIRSDNHMDASEHPFSIPRCMDDAGVMVEELTVKNYDGSNLAIVGTSNNRGRMLTRQNQWQQLYQLGNGSGSGCIHNETPYKDTGQAMSSGFEDVGYSTFSEFLAQKAITESCGEDLEEFVNTENKVVLGNTHGAVRTKIISKSGFSEFFVKKTLKGKGIMQRGPLHSGFNVEPRNKKSPKADSGIIVASTSLQPNFKNVTASPCVKSEPKVCSSAIGVSLQEWLKVGHKKVNKLERLNIFKQILELLDHAHSQGVVWHDIRPSSFRLLASNQVKYNGAAIQEEMRESSMDGDFQYLGKNLIKKRLEQGAFPSLHETLRKKKFIQNTNYLEKLPQTNLTSGIGLEIGNSSSKLGTHGNRSKYTGLCSVNSGHLNLASEHLEENYYVSPEELNGHGRTTSSNIYSLGVLFFELLGDFDFDGARVAALSDLRHRILPPNFLSENPREAGFCLWLLHPEPASRPSTRKILEYEVMILSPPASTEELPSSLDQDGTESELLLQFLVSLQEQKQKRAAKLLEDNQSLEADIEEIQRRHSSNKSYSHTDSFNEMEKCMVWKANSRFDMVSQLSVFPNTTEMRFEKNICQLETAYFSARSKVQLPENDSVVRTDIGLLRTRENCNQAWPSEEKTRPMDYLGDFFDGFCKYSRYSKFEVRGTLRNSDFNSSSNVICSLSFDRDGDYFAAAGVSKKIKIFGFNAVFNNLVDIHYPAVEMMNKSKLSCVCWNNYIKNYLASTDYDGAVKLWDASTGQETSQYKEHERRAWSVDFSQKNSLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCYDLRNTKAPWCILGGHGKAVSYVKFLDSETLVSASTDSTLKLWDLNRTNPCGLSTNACNSTLSGHTNEKNFVGLSVSDGYIACGSETNEVCAYYRSLPMPITSLKFGSIDPVCGKETDDDNGQFVSSVCWRGKSDMLIAANSSGCIKVLQMV 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5936957 5942840 + Bda025567.1 Bda07g00466 9356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00466 1025 ProSitePatterns Trp-Asp (WD) repeats signature. 904 918 IPR019775 -
Bda07g00466 1025 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 886 919 - -
Bda07g00466 1025 PANTHER PROTEIN SPA1-RELATED 2 1 1025 IPR044630 GO:0009640
Bda07g00466 1025 Coils Coil 575 602 - -
Bda07g00466 1025 ProSiteProfiles Protein kinase domain profile. 130 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00466 1025 ProSitePatterns Trp-Asp (WD) repeats signature. 799 813 IPR019775 -
Bda07g00466 1025 SMART WD40_4 718 762 IPR001680 GO:0005515
Bda07g00466 1025 SMART WD40_4 928 967 IPR001680 GO:0005515
Bda07g00466 1025 SMART WD40_4 773 812 IPR001680 GO:0005515
Bda07g00466 1025 SMART WD40_4 836 875 IPR001680 GO:0005515
Bda07g00466 1025 SMART WD40_4 879 917 IPR001680 GO:0005515
Bda07g00466 1025 SMART WD40_4 983 1023 IPR001680 GO:0005515
Bda07g00466 1025 ProSiteProfiles Trp-Asp (WD) repeats profile. 797 821 IPR001680 GO:0005515
Bda07g00466 1025 SUPERFAMILY WD40 repeat-like 732 1022 IPR036322 GO:0005515
Bda07g00466 1025 ProSiteProfiles Trp-Asp (WD) repeats profile. 886 919 IPR001680 GO:0005515
Bda07g00466 1025 Gene3D - 839 1025 IPR015943 GO:0005515
Bda07g00466 1025 Gene3D - 706 838 IPR015943 GO:0005515
Bda07g00466 1025 Pfam WD domain, G-beta repeat 733 761 IPR001680 GO:0005515
Bda07g00466 1025 Pfam WD domain, G-beta repeat 885 917 IPR001680 GO:0005515
Bda07g00466 1025 MobiDBLite consensus disorder prediction 1 21 - -
Bda07g00466 1025 Gene3D Transferase(Phosphotransferase) domain 1 288 544 - -
Bda07g00466 1025 SMART serkin_6 130 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g00466 1025 PANTHER PROTEIN SPA1-RELATED 2 1 1025 - -
Bda07g00466 1025 SUPERFAMILY Protein kinase-like (PK-like) 288 540 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00466 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1157.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00466 Bda-Chr7:5936957 Bda12g00841 Bda-Chr12:38051704 5.98E-31 dispersed
Bda07g00466 Bda-Chr7:5936957 Bda09g00507 Bda-Chr9:6716292 4.42E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00466 Bda_Chr07 FPKM 0.0 0.132607 0.318521 0.0 0.0 0.0 0.286274 0.799893 0.702163