Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00480 ATGGCTTCTTGGCTACAAGATGGCGAGCTAAATAATCTGAAGAAACAGCTTGCTCTTGCTGTGGACAGCATTCAATGGAGCTACGCAATTTTCTGGTCCATTTCATCCTCACACCCTCTGGTACTAGAATGGGGACATGGATACTACAATGGAGATATCAAGATCAGAAAAACATGTCAAGCAACAGAGTCTGATCTCAGTGATGCTGAAATGAGTGTCCATAGAAGTGAAGAATTAAGAGATCTTTACAGCTCCCTCTTGGCTGCTGAATCCAGCAAACAAGCTACAAGATTTTCAGCATTATCACCTGAAGATCTCACTGATACAGAGTGGTACTATCTGCTTTGCATGTCATTCGTATTCAACATCGGCCAAGGGTTGCCAGGAAGTGCATTTGCAAATGGTGAATGTATTTGGATCTCCAATGCTGATGTTGCTGACGCCAAAGTCTTCAGTCGATCTCTTCTTGCCAAGACAGTGGTATGCTTTCCATTTCTGGGAGGTGTGGTGGAGCTGGGAGTGACTAAGATGGTTACGGAGGATAATAGTCTCATTCAGCACGTTAAAGCTTCTATCTTAGAGATTCCATATCCCATAGCTTTCAAGAATGCTAAAGCTATTCCGTCAAAAACTGGAAAAGATGAAGATAATCCAATTGTAGTCTGTAATGGACTAGAAATGTCTTCACCAAGCTGGCAACTTCTCGACGACGAGTACAATAACAACAATCGTAATTCGATTAGTTCTAGTGAGTTTCCATCTGAATCAGTTGTGGAGAATGGAGAAGACGATTATCAGAGCAAGGATTCAAAACCCATCTCGTTAGATCTTTCTGCCAGTGATCTGCATTATCTTGGCATTGTTTCCGCTCTCCAAAACAGCTCGCGCCATTTCACATCAAGATTGAGTTTTCAAACACGTTATCTGAAATCCAGCTTCAAAAGATGGAAAGAAGGAAGACAAGTTAGTTTTCGAAATCGAAGCGGAAGAACTTCTCATAAGCTGTTGCAAAAAATTTTGTTGGAAGTTCCTGTTCTGCACAATGAAAGATTTTCTACTTCAAGGTCGTTAGTCCCTCCAATCAACAAGGTATCAGATGCTCCAATCAATTTGCCTTTACAGATTCGATTCCGATTTGTAATGCCAAATTGA 1152 41.23 MASWLQDGELNNLKKQLALAVDSIQWSYAIFWSISSSHPLVLEWGHGYYNGDIKIRKTCQATESDLSDAEMSVHRSEELRDLYSSLLAAESSKQATRFSALSPEDLTDTEWYYLLCMSFVFNIGQGLPGSAFANGECIWISNADVADAKVFSRSLLAKTVVCFPFLGGVVELGVTKMVTEDNSLIQHVKASILEIPYPIAFKNAKAIPSKTGKDEDNPIVVCNGLEMSSPSWQLLDDEYNNNNRNSISSSEFPSESVVENGEDDYQSKDSKPISLDLSASDLHYLGIVSALQNSSRHFTSRLSFQTRYLKSSFKRWKEGRQVSFRNRSGRTSHKLLQKILLEVPVLHNERFSTSRSLVPPINKVSDAPINLPLQIRFRFVMPN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6046376 6048330 + Bda025582.1 Bda07g00480 9370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00480 383 PANTHER TRANSCRIPTION FACTOR TT8 9 217 - -
Bda07g00480 383 PANTHER TRANSCRIPTION FACTOR TT8 226 354 - -
Bda07g00480 383 MobiDBLite consensus disorder prediction 245 269 - -
Bda07g00480 383 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 190 IPR025610 -
Bda07g00480 383 PANTHER TRANSCRIPTION FACTOR MYC1 226 354 - -
Bda07g00480 383 PANTHER TRANSCRIPTION FACTOR MYC1 9 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00480 - - - pavi:110762528 312.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00480 Bda08g00368 CCT
Bda06g00113 Bda07g00480 CCT
Bda07g00480 Bda08g00368 ECH
Bda06g00113 Bda07g00480 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00480 Bda-Chr7:6046376 Bda08g00368 Bda-Chr8:3763014 1.68E-81 dispersed
Bda07g00480 Bda-Chr7:6046376 Bda08g00515 Bda-Chr8:5197591 1.58E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00480 Bda_Chr07 FPKM 1.246709 0.854462 0.0 0.0 0.201577 0.0 0.097685 2.81762 2.373298