Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00484 ATGAGCGGACACGACTCCAAGTACTTCTCCACCACCAAGAAGGGAGAAATCCCTGAGCTCAAGGAGGAGCTCAATTCTCAGTACAAGGTCCCGTGTTTTTCCTTATCTATTGGTTTATTTGGTCGTTTGCGTGTTTATTTATGTGTATTTTATGTCGCATGTATGCCTCTATCTTGGTTGATCTACGATCTTTATTTAATTCTTCATATGGTTAATCACAAATTGAATCATGTTGGTATTTGTGCAGTTTTTAGGTGCGGAAGCAAATGTTTTTTACGCTTTTATAAGCAATACATACTTCTCTTTTATGGGAGGAAATACATTCAGTTATTGTTAGACATGTTCGTTCCAAATATAGCTCAGCCACAAAAAGGAATGATGTCACGTTCTGGTTGGATGTATAGTACTGTTTTAATTGATAAAAGAAAAGATGCTGTCAAAAAGGTGATTGCTGCAATGACTGTTGGGAAGGATGTATCATCTCTCTTTACAGATGTAGTAAATTGCATGCAAACAGAAAACTTAGAGCTGAAAAAGCTTGTGTATTTGTATCTTATTAATTACGCTAAAAGCCAACCTGATCTTGCAATACTTGCGGTGAATACGATTCACCCAAATCCTTTGATTCGTGCTTTAGCTGTACGAACAATGGGATGCATTCGTGTAGATAAGATTACAGAATATCTTTGTGATCCTCTCCAGAGGTGCCTTAAGGATGATGACCCTTATGTTCGCAAGACAGCGGCTGTTTGTGTTATTCTTCAACAAATGGAACTTATTACTAGCACTGACGTGGTTAGAAATCTTTGTAAAAAGATGGCTCCTCCTCTTGTTACTTTATTATCTGCAGAACCTGAGATACAATATGTTGCATTGCGGAATATTAACCTTATAGTACAAAAACGACCTACAATCCTTGCTCATGAAATCAAGGTTTTCTTCTGCAAATACAATGATCCAATTTATGTGAAGATGGAAAAACTAGAAATCATGATTAAGCTTGCTTCAGATCGAAATATTGACCAGGTTTTATTGGAGTTCAAAGAGTATGCCACTGAAGTAGATGTTGATTTTGTAAGGAAAGCTGTTCGTGCCATTGGTCGATGTGCCATCAAGTTAGAGAGAGCAGCTGAGAGATGCATGGCATCAATGATCTGGATTATTGGCGAATATGCAGAAAGAATTGACAATGCAGATGAACTCCTTGAAAGCTTCTTGGAGAGTTTTCCGGAAGAACCAGCTCAAGTCCAGTTGCAATTGCTGACTGCAACTGACAAACTTTTCCTTAAAAAGCCCACTGAGGGCCCGCAGCAGATGATTCAGGTTGTTTTAAATAATGCTACTGTTGAAACAGACAATCCTGATTTACGAGATCGTGCATATATTTATTGGCGACTCCTATCAACAGATCCTGAGGCAGCTAAGGATGTTGTCCTGGCTGAGAAGCCAGTTATCAGTGACGACTCAAACCAGCTTGATTCCTCTCTTCTTGATGAACTTCTTGCCAACGTTGCTACATTATCCTCAGTGTATCATAAACCACCTGAAGCATTTGTGACCCGTGTAAAGACGACAACCCAGAGAAATGATGACGAAGACTATCCTGAGGGGAGTGAAACTGGGTATCCTGAATCACCAGCTCAAGCTGCTGGCAGTAGCACATCACCTCCTACTAGTTCGAGTAGAGCACCATATTCTGCCCCTGCTCCAACTCCTCAACCTCAGGCTTCAGTCCCAGATTTGCTTGGTGATTTGATTGGACTAGATAACAGTGTTATTGTCCCTGTTGATGAACCTCCTGCTACTCCCACTGGTCCTCCTTTACCCGTTCTGCTTCTAGCATCAGTTGGTCAAGGTTTGCAAATCAGTGCACAGCTGACACGCCGAGATGGTCAAATCTTTTACAGTTTATTGTTTGAGAATAACTCTCAGATTCCATTGAATGGATTCATGATCCAGTTTAACAAGAACACCTTTGGCCTCGCAGCTGCAGGAACCCTTCAGAAAAAACGTATATCAGACGTGTTCTACTTCTCCGCCACAATCCCCAGAGGTATTCCATTGCTCATTGAACTCAGGACACTCATTGGCACTCCTGGGGTAAAATGCGCCGTCAAAACCCCAAGCCCGGACATGGCCCCCCTTTTCTTCGAAGCCATTGAGACTCCTTACCCAATGATTATCTCTCTTCCATGCCTAAGTTTCACTGTATAG 2214 41.37 MSGHDSKYFSTTKKGEIPELKEELNSQYKVPCFSLSIGLFGRLRVYLCVFYVACMPLSWLIYDLYLILHMVNHKLNHVGICAVFRCGSKCFLRFYKQYILLFYGRKYIQLLLDMFVPNIAQPQKGMMSRSGWMYSTVLIDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTIHPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAVCVILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCMASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATDKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDSSLLDELLANVATLSSVYHKPPEAFVTRVKTTTQRNDDEDYPEGSETGYPESPAQAAGSSTSPPTSSSRAPYSAPAPTPQPQASVPDLLGDLIGLDNSVIVPVDEPPATPTGPPLPVLLLASVGQGLQISAQLTRRDGQIFYSLLFENNSQIPLNGFMIQFNKNTFGLAAAGTLQKKRISDVFYFSATIPRGIPLLIELRTLIGTPGVKCAVKTPSPDMAPLFFEAIETPYPMIISLPCLSFTV 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6070542 6077369 - Bda025586.1 Bda07g00484 9374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00484 737 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 139 252 - -
Bda07g00484 737 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 1 29 - -
Bda07g00484 737 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 672 722 - -
Bda07g00484 737 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 252 381 - -
Bda07g00484 737 PIRSF Beta_adaptin 1 31 IPR016342 GO:0015031|GO:0030276
Bda07g00484 737 PIRSF Beta_adaptin 252 383 IPR016342 GO:0015031|GO:0030276
Bda07g00484 737 PIRSF Beta_adaptin 135 253 IPR016342 GO:0015031|GO:0030276
Bda07g00484 737 PIRSF Beta_adaptin 381 665 IPR016342 GO:0015031|GO:0030276
Bda07g00484 737 SUPERFAMILY ARM repeat 140 517 IPR016024 -
Bda07g00484 737 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 672 722 IPR026739 GO:0016192
Bda07g00484 737 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 252 381 IPR026739 GO:0016192
Bda07g00484 737 MobiDBLite consensus disorder prediction 545 566 - -
Bda07g00484 737 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 673 721 IPR009028 GO:0006886|GO:0016192|GO:0030117
Bda07g00484 737 Pfam Adaptin N terminal region 140 253 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bda07g00484 737 Pfam Adaptin N terminal region 382 469 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bda07g00484 737 Gene3D - 252 380 IPR011989 -
Bda07g00484 737 Gene3D - 381 528 IPR011989 -
Bda07g00484 737 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 139 252 IPR026739 GO:0016192
Bda07g00484 737 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 1 29 IPR026739 GO:0016192
Bda07g00484 737 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 382 669 - -
Bda07g00484 737 Gene3D - 135 251 IPR011989 -
Bda07g00484 737 Gene3D - 605 683 IPR013037 GO:0006886|GO:0016192
Bda07g00484 737 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 382 669 IPR026739 GO:0016192
Bda07g00484 737 SUPERFAMILY Clathrin adaptor appendage domain 605 670 IPR013041 -
Bda07g00484 737 Pfam Beta2-adaptin appendage, C-terminal sub-domain 673 722 IPR015151 GO:0006886|GO:0016192|GO:0030131
Bda07g00484 737 MobiDBLite consensus disorder prediction 520 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00484 K12392 AP1B1; AP-1 complex subunit beta-1 - rcu:8268804 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00484 Bda08g00515 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00896 Bda-Chr11:8756402 Bda07g00484 Bda-Chr7:6070542 5.04E-23 transposed
Bda15g00227 Bda-Chr15:4960573 Bda07g00484 Bda-Chr7:6070542 3.67E-12 transposed
Bda07g00484 Bda-Chr7:6070542 Bda09g00032 Bda-Chr9:478304 1.64E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00484 Bda_Chr07 FPKM 0.0 1.516703 3.760183 4.925398 16.024626 15.139008 15.521629 0.0 0.464759