Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00496 AATCTTTTTTCTGCAATGGAGTTTAGATTTGGGTCTGAGGAAAAACCAGAAACGTCATGTTCTTCGTCGGCCGAGAGCAGTACTTCCCGTCTGGAGGGTCTGTCGGATGAAGAGGTTATACTGGCTTCTAACAGGCCGAAGAAACCAGCCGGTAGGAGGGTTTTTCGGGAAACGAGGCACCCGGTTTTTAGAGGGGTCCGCCGGAGGAACAACGGTAAATGGGTCTGCGAGCTGCGCGAGCCGAAAACGAAAGCGAGGATTTGGCTCGGGACTTACCCGAAGGCAGAGATGGCGGCGAGAGCGCACGACGTCGCCGCCCTAGCTCTGCGGGGAAAGGAGGCTTGCCTGAATTTCGCCGACTCTAAGTGGCGATTGCCAAAGCCATTACAGTCGAACGACGTGGGTGATATTAAGATTGCTGCTGCTCTCGCAGCCCGGAGTTTCGAGGTGGACGGAGGATGTGGCGGAGGTGAAGCGACGAAGGAGAAAATGGATGACGAAGAGCTAGAAGTTGATACACCACTGTTGATCGCTAGAATAGCTGAAACTCCTCTTCTCTCTCCGAGACCGTTCTGTGCAGGGCATGTGAATTACGTCAGCTGGGATGACACTGAGAGTAGTGCTGACATGTCGTTATGGAATTTTTGCATTTAA 654 52.75 NLFSAMEFRFGSEEKPETSCSSSAESSTSRLEGLSDEEVILASNRPKKPAGRRVFRETRHPVFRGVRRRNNGKWVCELREPKTKARIWLGTYPKAEMAARAHDVAALALRGKEACLNFADSKWRLPKPLQSNDVGDIKIAAALAARSFEVDGGCGGGEATKEKMDDEELEVDTPLLIARIAETPLLSPRPFCAGHVNYVSWDDTESSADMSLWNFCI 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6224391 6225044 + Bda025602.1 Bda07g00496 9386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00496 217 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Bda07g00496 217 MobiDBLite consensus disorder prediction 1 32 - -
Bda07g00496 217 MobiDBLite consensus disorder prediction 15 30 - -
Bda07g00496 217 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 165 217 - -
Bda07g00496 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 11 150 - -
Bda07g00496 217 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Bda07g00496 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 165 217 IPR045277 GO:0003700
Bda07g00496 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 150 IPR045277 GO:0003700
Bda07g00496 217 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00496 - - - bhj:120092445 209.149
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00496 Bda08g00533 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00496 Bda-Chr7:6224391 Bda15g00742 Bda-Chr15:10900169 1.86E-57 dispersed
Bda07g00496 Bda-Chr7:6224391 Bda08g00533 Bda-Chr8:5329583 3.54E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g402 Blo02g01095 Blo03g00192 . Bda08g00533 Bpe05g00627 . . . . . Cma02g01486 Cma15g01197 Car02g01244 Car15g01085 . . Cpe05g00306 . . . . . . . . . . . . . . . . Cone6ag0746 Cone9ag0749 . Csa05g00325 Chy09g01184 . . . Bda07g00496 . . Bpe11g00686 . . . Cmo02g01524 Cmo15g01261 . . . . . Cpe13g00177 Bhi12g00202 . . . . . Lcy12g1704 Cla01g00302 Cam01g0314 Cec01g0305 Cco01g0321 Clacu01g0314 Cmu01g0299 Cre09g2209 Lsi09g00310 . . Cme09g01717
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021252 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16107 PF00847 AP2 8.80E-14 CL0081 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00496 Bda_Chr07 FPKM 1.593141 1.743659 1.143921 1.686486 1.551822 2.868721 2.190579 3.056617 2.555844