Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00504 ATGAAAGAAGAATCGCCGTACTCGGACCAAGTATCGGACCACGATGAGAAGATGAAATCTCCGCTGAAACCGTCTTCGAAGGACGGTGTTGCAACATCCGATCTCAGCACCTGCGATCCGGAAGAAGACACTCAGACCAAAAAAATTAGAAATAGAAAGGTGGCGTTTGAAGCTATCCCGATGAAAGAAGAACCGGTCCATTCGAACCCAATATCGGACCTCGATGAGAAGTCAAAAATGCCGCCGGAACCGCCCACTGGGAGGCTCCCCGTTGTGGTGCAGCTCCCTTTGCCGATGCCTGTGAATACAGCTCGGAGATCTACGAAGGACCGGCATACCAAGGTGGAGGGCCGGGGTCGGAGGATCCGTATACCTGCCTCCTGCGCAGCCCGAATCTTTCAGCTGACCAGCGAATTGGGCCACAAATCGGACGGCGAGACTGTCCGGTGGCTTCTCAAACACGCCGAGCAAGCGATAATTGAAGCAACTGGAACCGGAACTGTTCCGGCCATCGCCGTCTCTGTCAATGGGACCCTCAAAATCCCGACCACCGCTAACTGTAACTGCCTGAGCAATAACAAGAATAAAAAGAGAAAGCGGCCTTCGACGTCCCAGTTCATCGACATAAACGAAGGGGTTTCTCACACAACCGGGTTCGCTCCGCTCCAACCGACCACCCCAGCGTCGGCGAATCCACCAAGTCTGTTGCCGGTTTGGGCCGTAGGAAGCTCGGGGACAATGGTTCCCCCGAACGCCTTCTGGATGATTCAGGCGGCGCCGACGGAGAAAGCCCAGGAATTCCCCGCCGGAACGTCAAACCAAAGCCCTCAGATATGGACTATATCTCCGGCTGTAACGCAGGTTTTCAACTTGTTTCCAAGACCTATTTCCTCTTTTGGCTCGAATCAGCCAGTGGGGGTAACTCTTCCATCCGCGATCAAGCTCCGAACTCCAGCGCTCTCCTTCTGCAATAGCTCGTCGACCTCCGCTGTTAGTATGAGCACTTCAGGCCCTAAAACGGCGAAGAAATCAGGGACCATGGCGGCGACGAGCGTGAGCTGTAGGGGCAGTGGAAATGATGAATCTAAAGTTCAGATGCTTAGAGATTTTTCGTTGGAGATTTTTCATAAACAGGAAATACAGTTCATGGGGAGCATGGGGAATAAACAGAAGACGCAACGTACTTTGAAACCATGA 1197 52.97 MKEESPYSDQVSDHDEKMKSPLKPSSKDGVATSDLSTCDPEEDTQTKKIRNRKVAFEAIPMKEEPVHSNPISDLDEKSKMPPEPPTGRLPVVVQLPLPMPVNTARRSTKDRHTKVEGRGRRIRIPASCAARIFQLTSELGHKSDGETVRWLLKHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTANCNCLSNNKNKKRKRPSTSQFIDINEGVSHTTGFAPLQPTTPASANPPSLLPVWAVGSSGTMVPPNAFWMIQAAPTEKAQEFPAGTSNQSPQIWTISPAVTQVFNLFPRPISSFGSNQPVGVTLPSAIKLRTPALSFCNSSSTSAVSMSTSGPKTAKKSGTMAATSVSCRGSGNDESKVQMLRDFSLEIFHKQEIQFMGSMGNKQKTQRTLKP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6434007 6435203 + Bda025610.1 Bda07g00504 9394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00504 398 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 32 392 - -
Bda07g00504 398 Pfam TCP family transcription factor 107 197 IPR017887 -
Bda07g00504 398 MobiDBLite consensus disorder prediction 1 90 - -
Bda07g00504 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 392 IPR005333 GO:0003700
Bda07g00504 398 ProSiteProfiles TCP domain profile. 108 162 IPR017887 -
Bda07g00504 398 MobiDBLite consensus disorder prediction 1 23 - -
Bda07g00504 398 MobiDBLite consensus disorder prediction 40 60 - -
Bda07g00504 398 MobiDBLite consensus disorder prediction 68 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00504 - - - jre:108990694 361.303
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00504 Bda09g00062 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00044 Bda-Chr5:2844815 Bda07g00504 Bda-Chr7:6434007 4.38E-28 dispersed
Bda07g00504 Bda-Chr7:6434007 Bda10g00932 Bda-Chr10:43698140 2.32E-33 dispersed
Bda07g00504 Bda-Chr7:6434007 Bda09g00062 Bda-Chr9:1242750 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16108 PF03634 TCP 6.00E-28 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00504 Bda_Chr07 FPKM 14.462043 13.180037 5.740097 5.292675 0.418286 0.316837 0.564843 2.129905 3.121385