Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00507 ATGGAAGATCCCGCTGCATCCCGGTTGAATTCGGCTCTTCGAAATTCCTCTTCTTCTTCCTCCTCTTCATCTTCTACTTCCCTGCTTAATTTGCCTGTAACAATGTCCCGGAATTCTTCGTCTTTCGAAACCCTAACCCCTTCTCGCCATATTGATCGGATGATAAATCTTAATCACCGTAAATCCCCTTCGAGAGCTATATATTCTGATAGGTTTATTCCCAGTAGATCAGGTTCTAATTTCGCGCTGTTCGACATCTCTCCTTCGGCGAATTCTCCTGCGGATACCCGCGAAGATAGCTCCAGTGCATATGCGACGCTTATTCGAACAGCCCTGTTTGGTCCCAATTCCGGAGTGGTTTCTCCAGGGACGCCAGAAAAGAGTAATATTTCGATGAATTTACCCAACCAAAATATTTTTCGGTACAAAACGGAGACTCGTCGTTCTATGCAATCCCTCTCTCCATTTGGTTTTGACGACATAGTTCCGGGTGTTAATCATACTCCAGCAAAGGCACCTCGAAAGGTTACGCGCTCGCCTTATAAGGTTCTCGACGCGCCAGCATTGCAAGATGATTTTTATTTGAATCTTGTGGATTGGTCTGCCCATAATATTCTAGCTGTTGGCTTGGGTAACTGTGTTTATTTGTGGAATGCCTGTAGTAGCAAGGTAACAAAATTGTGCGACTTGGGAAATGATGACAGTGTCTGTTCAGTTGGTTGGGCTCATCGAGGAACTCATCTAGCTGTTGGGACTAGCACTGGCAAAGTTCAGATTTTATTTAGATTGATTGATCTAAATCTTTTTATAATTATTTGGGATGCATCTCGCTGCAAAAGAGTAAGAACCATGGAAGGTCATCGTTTACGAGTTGGGGCTTTAGCTTGGAGTTCATCTTTTTTGACTTCTGGTAGCAGGGACAAAAGTATTCTCCAGCGTGATATTCGTGCTCAGGAAGACTTTGTGAGTAAACTATCTGGGCACAAGTCAGAGGTTTGTGGGTTGAAATGGTCTTATGATAACCGCGAGTTAGCATCGGGGGGTAATGACAACAGACTTTTTGTTTGGAATCAACATTCCACCCAACCTTTGCTTAAATATTGCGAGCATACGGCTGCAGTAAAAGCAATTGCATGGTCTCCCCATCTTCATGGGCTTCTTGCATCTGGGGGAGGGACGGCAGATAGATGTATACGTTTCTGGAACACGACAACAAACTCACAATTGAACTGCATCGACACAGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAGAATGTGAACGAACTGGTTAGCACCCATGGATATTCTCAAAATCAAATAATAGTTTGGAGATACCCAGCCATGTCAAAGTTGGCAACACTAACGGGCCATACATACCGAGTGCTTTATCTTGCTATCTCTCCTGATGGACAGACCATTGTAACTGGGGCTGGAGATGAGACACTTAGATTTTGGAACGTCTTCCCCTCCCTTAAATCTCAGGTAAAGATATTAATCCTTCCACTTGGTAATGTTCTGAGATTTGAAGATCTTAGTTACTCTTCTTAA 1551 43.65 MEDPAASRLNSALRNSSSSSSSSSSTSLLNLPVTMSRNSSSFETLTPSRHIDRMINLNHRKSPSRAIYSDRFIPSRSGSNFALFDISPSANSPADTREDSSSAYATLIRTALFGPNSGVVSPGTPEKSNISMNLPNQNIFRYKTETRRSMQSLSPFGFDDIVPGVNHTPAKAPRKVTRSPYKVLDAPALQDDFYLNLVDWSAHNILAVGLGNCVYLWNACSSKVTKLCDLGNDDSVCSVGWAHRGTHLAVGTSTGKVQILFRLIDLNLFIIIWDASRCKRVRTMEGHRLRVGALAWSSSFLTSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPLLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPAMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQVKILILPLGNVLRFEDLSYSS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6495037 6498230 - Bda025616.1 Bda07g00507 9397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00507 516 Pfam WD domain, G-beta repeat 362 402 IPR001680 GO:0005515
Bda07g00507 516 Pfam WD domain, G-beta repeat 451 487 IPR001680 GO:0005515
Bda07g00507 516 Pfam WD domain, G-beta repeat 322 357 IPR001680 GO:0005515
Bda07g00507 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 488 - -
Bda07g00507 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Bda07g00507 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 357 - -
Bda07g00507 516 SMART WD40_4 221 261 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 405 445 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 318 357 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 177 218 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 360 402 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 277 314 IPR001680 GO:0005515
Bda07g00507 516 SMART WD40_4 448 487 IPR001680 GO:0005515
Bda07g00507 516 Gene3D - 170 491 IPR015943 GO:0005515
Bda07g00507 516 MobiDBLite consensus disorder prediction 9 29 - -
Bda07g00507 516 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Bda07g00507 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 488 IPR001680 GO:0005515
Bda07g00507 516 SUPERFAMILY WD40 repeat-like 190 488 IPR036322 GO:0005515
Bda07g00507 516 PANTHER PROTEIN FIZZY-RELATED 1 24 497 - -
Bda07g00507 516 MobiDBLite consensus disorder prediction 1 29 - -
Bda07g00507 516 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 24 497 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00507 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - mnt:21405920 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00507 Bda-Chr7:6495037 Bda14g00137 Bda-Chr14:947993 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37