Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00509 ATGAAGATGGATTTTCTGTCATTCCTTCTTGTGTTTTCCGCCATTAATTCCCTTGTCATGGGAAGTAATGAGCTGCAAACTTACATTGTCCACGTGAAGAAGCCGGATAGAGTCTTTTCACAGGCTGAAGATTTAGAGAACTGGTATAAATCTTTCTTTCCTGCTGGTGTTTCGGGTTCAGGGGAGCAGCCTAAAATGCATTATGCATACAAGAACGTGATCAGTGGTTTTTCTGCAAGGCTTACGAATGAGGAAGTTAGAGCTATGGAAGAAAAGGATGGCTTTATTTCAGCAATACCCGAGAGGAGAGTGAAGTTACAGACAACTCACACTCCCAGATTCTTGGGGTTGCACCAGAATCTCGGGTTTTGGCCAGAATCGACGTTTGGAAAGGGAACGATCATCGGAGTGCTTGATACTGGAGTTTCACCGGAACATCCTTCATTCAGTGATGAGGGAATTCCACATCCTCCGGCAAAATGGAAAGGAAAGTGCGAGTTTGACGTATCGATGTGTAATAACAAACTTATAGGCGCAAGAGCTTTTGATATCTCGGCTAAGGCGGCTGCAGTTCAGAAAGCTGAGCCACCCGTAGATGAAGACGGACATGGAACTCACACAGCCAGCACGGCTGCTGGGAATTTTGTGAAGAATGCTGAAGCGTTGGGGAATGCTGAAGGCACGGCAGTGGGTATGGCGCCTCTTGCTCACCTTGCGATTTACAAGGTCTGTTTCGGCGAAGATTGTTCAGACAGTGACATGCTTGCCGGACTTGATGCCGCTATTGAAGATGGGGTCGATGTAATCTCAATATCCATAGGTGGACCTTCAGCTCCGTTTTTCAACGACGCTATAGCTGTTGGATCATTTGCAGCGATTCAGAAAGGAATATTTGTAAGTTGTTCGGCATCGAACTTCGGCCCTTTTAACGCCACACTGTCAAATGAAGCTCCATGGATTCTCACAGTCGGAGCGAGCGACATCGATAGAAGAGTCGTAGCTTCCGCAAAGCTCGGAAATGGCGAGGAATACGATGGAGAATCACTTTTCCAGCCAGCTGACTTCCCACCAGCTTTGATTCCTCTTGTTTATGCCGGCGAGAATGGAAATGTAACGTCCTCCTTGTGTGCTGAAGGATCGTTAAAAGACGTCGACGTCAGAGGGAAGATAGTTCTATGCGAGAGAGGAGGAGGAATAGCAAGAATTGCGAAAGGGTTGGCAGTGAAAAACGCGGGGGGAGCGGCCATGATTTTGATGAACCAAGAACAAGACGGCTTCAGCACCGAAGTCGACGCTCACGTTCTTCCGGCGACCCACATCAGCTTCGCTGCCGGACTTAAGATCAAATCCTACATAAATTCAACTAAACATCCCACTGCAACAATCATATTCAAAGGAACTGTGTTCGGAAATTCCTTGGCCCCGGCTGTTGCTTCTTTCTCTTCAAGAGGTCCCAGCAAAGCAAGCCCAGGAATTCTAAAACCCGACATCATCGGACCGGGGGTCAGCATTCTCGCCGCATGGCCGTTCCCTCTCGAAAATCAGACAGATTTCGGCGCAACATTCAACGTGATTTCCGGCACATCTATGTCTTGTCCTCATCTCAGTGGAATCGCAGCCTTGCTCAAGAGTGCGCATCCTTCTTGGTCGCCGGCAGCGATCAAATCTGCAATAATGACATCAGCCAATCAACTGAACCTTCAAGGGAAACCAATCCTCGATCAGGCTCTCCAACCTGCCGATATTTTTGCCATCGGCTCAGGTCATGTAAACCCATCAAGGGCCAACGCTCCGGGACTAATTTACGACATTCAACCTGATGATTACATGCCTTACCTCTGTGGTTTGGGCTACAAAGACGACGAAATAACGATCATAGCTCATCGGCCGGTAAAATGCTATGAAGAATCAAGCATACCAGAAGGAGAGCTGAACTACCCTTCATTCTCAGTAGCATTGGGACCATCTCAGACCTTCACAAGGACTGTCACGAACGTAGGCGAGGCCTACTCGTCTTACTCGGTGGAAATCTCGCCGCCGGAAGGAGTTTACGTAAGTGTTTCCCCCCAAAAGCTTTATTTCACAGGAGTGAACCAGAAGCTGACATATTCAGTGACTTTCGGACGTACTTATTCAGCTACGACCAAAAATGAATTCTCTCAGGGATTTCTGAGATGGGTTTCCGCTAAATATACTGTCAGGAGTCCCATTTCCGTAAGATTTGTCTAA 2229 47.64 MKMDFLSFLLVFSAINSLVMGSNELQTYIVHVKKPDRVFSQAEDLENWYKSFFPAGVSGSGEQPKMHYAYKNVISGFSARLTNEEVRAMEEKDGFISAIPERRVKLQTTHTPRFLGLHQNLGFWPESTFGKGTIIGVLDTGVSPEHPSFSDEGIPHPPAKWKGKCEFDVSMCNNKLIGARAFDISAKAAAVQKAEPPVDEDGHGTHTASTAAGNFVKNAEALGNAEGTAVGMAPLAHLAIYKVCFGEDCSDSDMLAGLDAAIEDGVDVISISIGGPSAPFFNDAIAVGSFAAIQKGIFVSCSASNFGPFNATLSNEAPWILTVGASDIDRRVVASAKLGNGEEYDGESLFQPADFPPALIPLVYAGENGNVTSSLCAEGSLKDVDVRGKIVLCERGGGIARIAKGLAVKNAGGAAMILMNQEQDGFSTEVDAHVLPATHISFAAGLKIKSYINSTKHPTATIIFKGTVFGNSLAPAVASFSSRGPSKASPGILKPDIIGPGVSILAAWPFPLENQTDFGATFNVISGTSMSCPHLSGIAALLKSAHPSWSPAAIKSAIMTSANQLNLQGKPILDQALQPADIFAIGSGHVNPSRANAPGLIYDIQPDDYMPYLCGLGYKDDEITIIAHRPVKCYEESSIPEGELNYPSFSVALGPSQTFTRTVTNVGEAYSSYSVEISPPEGVYVSVSPQKLYFTGVNQKLTYSVTFGRTYSATTKNEFSQGFLRWVSAKYTVRSPISVRFV 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6502406 6504634 - Bda025618.1 Bda07g00509 9399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00509 742 Gene3D - 329 470 - -
Bda07g00509 742 Pfam Fibronectin type-III domain 643 739 IPR041469 -
Bda07g00509 742 Pfam PA domain 361 448 IPR003137 -
Bda07g00509 742 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 135 146 IPR023827 -
Bda07g00509 742 SUPERFAMILY PA domain 366 455 IPR046450 -
Bda07g00509 742 CDD Peptidases_S8_3 104 563 IPR034197 -
Bda07g00509 742 SUPERFAMILY Subtilisin-like 106 599 IPR036852 GO:0004252|GO:0006508
Bda07g00509 742 Gene3D Peptidase S8/S53 domain 132 609 IPR036852 GO:0004252|GO:0006508
Bda07g00509 742 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Bda07g00509 742 PRINTS Subtilisin serine protease family (S8) signature 199 212 IPR015500 -
Bda07g00509 742 PRINTS Subtilisin serine protease family (S8) signature 526 542 IPR015500 -
Bda07g00509 742 Pfam Subtilase family 130 569 IPR000209 GO:0006508|GO:0008236
Bda07g00509 742 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 22 739 IPR045051 -
Bda07g00509 742 Gene3D - 613 741 - -
Bda07g00509 742 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 22 739 - -
Bda07g00509 742 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 14 107 IPR037045 -
Bda07g00509 742 CDD PA_subtilisin_like 337 462 - -
Bda07g00509 742 ProSiteProfiles Serine proteases, subtilase domain profile. 114 596 - -
Bda07g00509 742 Pfam Peptidase inhibitor I9 27 106 IPR010259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00509 - - - jre:109010575 1089.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00509 Bda-Chr7:6502406 Bda09g00075 Bda-Chr9:1422336 0 dispersed
Bda07g00501 Bda-Chr7:6354738 Bda07g00509 Bda-Chr7:6502406 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00509 Bda_Chr07 FPKM 5.181858 6.134841 5.240872 4.72816 5.496686 5.455176 6.432217 4.09241 4.085124