Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00590 ATGGAGGAGGAGAAACGAGTTGTCGTACAGAGCCTGATCGAGGCAGTGAACGAGATTGCTTCCATCTCGGATTACAGGCACACTGTGAAGAAGGAGTATTGCAATTTAGCAAGGAGATTGAAGCTTCTGACTCCAATGTTCGAGGAAATCAGGGACAGCGGGGAGGCGCTCCCCGAGGAGACTCTGAAGGCTCTAGTTTCGTTAAAAGCAACTCTGAAATCAACTATAGAGTTGCTCAAATTCGGAAGCGAGGGAAGTAAGATTTACCTGGTTCTTGAAATGGAGAAAATTATGCACAAATTCCATGAGATAACAGCTCAGTTGGAGCAAGCTTTGAGTGGAATTTCCTATGATAATCTGGACACATCTGATGAAGTTAAGGAGCAGGTTGAACTTGTTCTTGCCCAGTTTAGAAGAGCTAAAGGCCGGATTGATATGCCTGACGCTCAGCTGCATGACGAGCTTGTATCACTATATCAGACAGTTACAGATCCATCTGTCATACGGAGATTGGCTGAAAAATTGGATCTAACTGGAGTATCTGACCTTAAACAAGAATCACTGGCTTTGTCTGAGATGGCTATTGCCAGTGGTGATGACCCCGGAGAGACTTTTGAGAAGATGTTAATGCTCCTGAAGAAAATAAAAGATTTTGTATTGACAGAATACCCTGATATGGATGATCCAGCTCAAGATAAAAGTATATCCTCTAGTAATGGAGTACAAGTATATGGAGAAAGTAATTACAAATCTCCAGTTATTCCAGACGATTTTCGTTGCCCCATTTCTCTGGAATTGATGAAGGATCCTGTCATTGTTTCTACAGGCCAGACTTATGAACGTTCCTGCATTGAAAAGTGGCTGGAAGCAGGGCATGGAACATGTCCAAAGACGCAACAGACACTCTCCAGCACCACTCTTACGCCAAATTATGTCTTGCGTAGTCTCATAGCACAGTGGTGTGAGGCAAATGGGCTTGAACCACCAAAGAGACCCAGTAGTTCTCAGTCTAAAACATCTGCTTGCTCACCTGCCGAACGCACTAAAATTGAAATTCTTCTTCGTAAACTGATGTCTGGAAACCCTGAAGACCAGCGATGTGCTGCTGGTGAGATTCGCCTTCTTGCCAAGCGCAATGCAGATAACCGAGTAGCCATTGCCGAGGCCGGTGCAATCCCTCTTCTTGTAAGCCTCCTTTCAACGACAGATTCACGCATACAGGAGCATGCAGTAACAGCACTTCTTAACCTTTCCATCTGTGAGGATAATAAGGGAGCCATTGTGTCCTCTGGGGCTGTCCCAGGTATAGTTCACGTGCTCAAGAAAGGAAGCATGGAAGCTAGGGAAAATGCAGCAGCCACCCTTTTCAGCCTTTCAGTTGTGGATGGAAATAAAGTTACAATTGGTGCCTCTGGAGCCATTCCACCACTTGTCATGCTGCTAAGTGAAGGAACACAAAGGGGAAAGAAAGATGCTGCCACTGCTCTCTTCAACTTGTGCATATACTTGGGGAACAAAGGAAAGGCAGTCCGGGCTGGTGTCATTCCCATACTGATGCAACTATTAACAGAGCCTGGAGGAGGAATGGTGGATGAGGCCTTAGCCATCTTAGCCATATTGGCTAGCCATCCTGAAGGTAAAGGTGCCATTGGAGCAGCCGATGCTGTTCCTGTTTTAGTAGAGGTTATCGGGACTGGATCTCCCAGGAACAGAGAGAATGCAGCTGCAGTTTTGGTGCACCTTTGTGCAGGGGACCATCGACATCTAGTTGCGGCTAAGGAACTAGGGGTGGTCGGGGCATTGATCGATTTGGCGCAAACCGGCACAGATAGAGGCAAGAGAAAAGCTGCACAATTGCTTGAGCGGATGAGCAGGTTTATAGAGCAGCAGGCTCAGGCTCAGGCGGAGTCTCAATCGCAGATCCAGACATCCGACCACCTGTTAACTGCGGACAGCTGA 1959 46.81 MEEEKRVVVQSLIEAVNEIASISDYRHTVKKEYCNLARRLKLLTPMFEEIRDSGEALPEETLKALVSLKATLKSTIELLKFGSEGSKIYLVLEMEKIMHKFHEITAQLEQALSGISYDNLDTSDEVKEQVELVLAQFRRAKGRIDMPDAQLHDELVSLYQTVTDPSVIRRLAEKLDLTGVSDLKQESLALSEMAIASGDDPGETFEKMLMLLKKIKDFVLTEYPDMDDPAQDKSISSSNGVQVYGESNYKSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGLEPPKRPSSSQSKTSACSPAERTKIEILLRKLMSGNPEDQRCAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSTTDSRIQEHAVTALLNLSICEDNKGAIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDGNKVTIGASGAIPPLVMLLSEGTQRGKKDAATALFNLCIYLGNKGKAVRAGVIPILMQLLTEPGGGMVDEALAILAILASHPEGKGAIGAADAVPVLVEVIGTGSPRNRENAAAVLVHLCAGDHRHLVAAKELGVVGALIDLAQTGTDRGKRKAAQLLERMSRFIEQQAQAQAESQSQIQTSDHLLTADS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7230889 7234576 - Bda025711.1 Bda07g00590 9480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00590 652 Coils Coil 616 636 - -
Bda07g00590 652 MobiDBLite consensus disorder prediction 631 652 - -
Bda07g00590 652 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Bda07g00590 652 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 638 - -
Bda07g00590 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 432 IPR000225 GO:0005515
Bda07g00590 652 CDD RING-Ubox_PUB 258 300 IPR045210 -
Bda07g00590 652 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Bda07g00590 652 Pfam Armadillo/beta-catenin-like repeat 379 418 IPR000225 GO:0005515
Bda07g00590 652 Pfam Armadillo/beta-catenin-like repeat 463 500 IPR000225 GO:0005515
Bda07g00590 652 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Bda07g00590 652 PANTHER U BOX DOMAIN-CONTAINING 6 638 - -
Bda07g00590 652 SUPERFAMILY ARM repeat 350 630 IPR016024 -
Bda07g00590 652 Gene3D - 341 526 IPR011989 -
Bda07g00590 652 Gene3D - 7 118 IPR036537 GO:0007166
Bda07g00590 652 SMART arm_5 502 542 IPR000225 GO:0005515
Bda07g00590 652 SMART arm_5 543 583 IPR000225 GO:0005515
Bda07g00590 652 SMART arm_5 420 460 IPR000225 GO:0005515
Bda07g00590 652 SMART arm_5 379 419 IPR000225 GO:0005515
Bda07g00590 652 SMART arm_5 585 625 IPR000225 GO:0005515
Bda07g00590 652 SMART arm_5 461 501 IPR000225 GO:0005515
Bda07g00590 652 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Bda07g00590 652 Gene3D - 527 645 IPR011989 -
Bda07g00590 652 SUPERFAMILY RING/U-box 246 330 - -
Bda07g00590 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Bda07g00590 652 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00818 Bda07g00590 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01561 Bda-Chr1:51500294 Bda07g00590 Bda-Chr7:7230889 1.92E-176 dispersed
Bda06g00438 Bda-Chr6:6458074 Bda07g00590 Bda-Chr7:7230889 8.00E-164 dispersed
Bda07g00590 Bda-Chr7:7230889 Bda15g00313 Bda-Chr15:5969027 1.61E-06 dispersed
Bda07g00963 Bda-Chr7:11504151 Bda07g00590 Bda-Chr7:7230889 1.56E-07 dispersed
Bda09g01144 Bda-Chr9:42193131 Bda07g00590 Bda-Chr7:7230889 2.50E-18 dispersed
Bda10g00107 Bda-Chr10:2577427 Bda07g00590 Bda-Chr7:7230889 8.54E-06 dispersed
Bda11g01486 Bda-Chr11:21877056 Bda07g00590 Bda-Chr7:7230889 1.71E-34 dispersed
Bda13g00208 Bda-Chr13:2641205 Bda07g00590 Bda-Chr7:7230889 1.29E-09 dispersed
Bda13g01245 Bda-Chr13:34855875 Bda07g00590 Bda-Chr7:7230889 3.05E-16 dispersed
Bda14g00824 Bda-Chr14:6340343 Bda07g00590 Bda-Chr7:7230889 1.22E-18 dispersed
Bda14g00832 Bda-Chr14:6406664 Bda07g00590 Bda-Chr7:7230889 5.75E-19 dispersed
Bda01g01749 Bda-Chr1:53663078 Bda07g00590 Bda-Chr7:7230889 2.42E-59 transposed
Bda04g00003 Bda-Chr4:39685 Bda07g00590 Bda-Chr7:7230889 3.96E-09 transposed
Bda07g01159 Bda-Chr7:13705313 Bda07g00590 Bda-Chr7:7230889 6.89E-49 transposed
Bda09g01286 Bda-Chr9:44634210 Bda07g00590 Bda-Chr7:7230889 3.78E-55 transposed
Bda10g00536 Bda-Chr10:39177759 Bda07g00590 Bda-Chr7:7230889 4.16E-83 transposed
Bda12g00757 Bda-Chr12:35699324 Bda07g00590 Bda-Chr7:7230889 5.20E-90 transposed
Bda14g00363 Bda-Chr14:2631344 Bda07g00590 Bda-Chr7:7230889 0 transposed
Bda14g01065 Bda-Chr14:9155228 Bda07g00590 Bda-Chr7:7230889 1.29E-83 transposed
Bda14g01078 Bda-Chr14:9435245 Bda07g00590 Bda-Chr7:7230889 1.81E-164 transposed
Bda14g01265 Bda-Chr14:13332278 Bda07g00590 Bda-Chr7:7230889 3.07E-25 transposed
Bda02g00818 Bda-Chr2:48770320 Bda07g00590 Bda-Chr7:7230889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00590 - - mnt:21407917 984.556