Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00648 ATGTTTGATCAGTTCCAAGCTTCTGCAAACCCACTAATGCAGCTCCAAGGTTTTGAAGTGGAGCTTCATGATTTCATCGAGAATTCTGATTTCGGCCAGTTTGTCGATATAATCAGGGGAGAAGACGAAAACCCACTTCTCAATTTCGATCGGGATCTCATTACAAATGGGTGTTGTTTAGCTGATCAGTTTGGTTCATCAAACGGAAGAGATGTCTTGGACTTCAATCGCGTTGCTGGATCAGACAGCCCAGAGTTCATGATGTTTAACAGATCGGAGAAATTTGACGACGGGGAAGTGATCGGAGGAGGTGAAGAAGACGATGGAGAGGATTCTTCTGCTACAACTACGACAGGGACGAATAAAACGACGACGAAGAGGGGTAAGGTTGATAGGTCGAGAACTTTGATTTCAGAGAGAAGAAGAAGAGGAAGGATGAAAGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACCAAGATGGATAAAGCCTCCATTGTCGGAGATGCTGTATTATACGTACAGGAGCTGCAAATGCAGGCGAAAAAACTCAAGACTGAGATAAAAGGACTCGAAGCATCAATGGAAAAAGCAGACAGATGTCAAGTAACTCAAAACAACCGTAAGAAGATTCATCAACCTCCTAACTCTACCTGCTTGGCTTCAAAGAAAATCATACAGATGGACATTTTTCAAGTACAGGAAAGAGGGTTTTACTTGAGAATAGTGTGCGACAAAGGTTATGGAGTCGCCTTGTCTCTTTATAAAGTTCTTGAATCTATGATGGGTTTTGATGTTCAGAGCTCGAATTTGATGACGACTGCTGAAAGATTTGTTTTAACTGCAACTCTCAATGTGATAAAAGATTGCGAGCAGGAGATGAATTTGCCAAAGTTGAAGCTTTGGTTGACTGGAGCTCTTCTTAGCCATGGATTTGAGTTTTAA 951 41.75 MFDQFQASANPLMQLQGFEVELHDFIENSDFGQFVDIIRGEDENPLLNFDRDLITNGCCLADQFGSSNGRDVLDFNRVAGSDSPEFMMFNRSEKFDDGEVIGGGEEDDGEDSSATTTTGTNKTTTKRGKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQAKKLKTEIKGLEASMEKADRCQVTQNNRKKIHQPPNSTCLASKKIIQMDIFQVQERGFYLRIVCDKGYGVALSLYKVLESMMGFDVQSSNLMTTAERFVLTATLNVIKDCEQEMNLPKLKLWLTGALLSHGFEF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7818050 7819817 + Bda025777.1 Bda07g00648 9538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00648 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 196 IPR036638 GO:0046983
Bda07g00648 316 Gene3D - 121 196 IPR036638 GO:0046983
Bda07g00648 316 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 90 315 - -
Bda07g00648 316 SMART finulus 136 185 IPR011598 GO:0046983
Bda07g00648 316 Coils Coil 176 203 - -
Bda07g00648 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Bda07g00648 316 Pfam Helix-loop-helix DNA-binding domain 135 180 IPR011598 GO:0046983
Bda07g00648 316 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 90 315 - -
Bda07g00648 316 MobiDBLite consensus disorder prediction 97 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00730 Bda07g00648 CCT
Bda07g00648 Bda09g00218 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00648 Bda-Chr7:7818050 Bda11g01575 Bda-Chr11:48947578 6.12E-16 dispersed
Bda07g01603 Bda-Chr7:29694986 Bda07g00648 Bda-Chr7:7818050 5.30E-19 transposed
Bda01g01894 Bda-Chr1:55110866 Bda07g00648 Bda-Chr7:7818050 1.41E-09 transposed
Bda02g00730 Bda-Chr2:48132745 Bda07g00648 Bda-Chr7:7818050 7.42E-65 wgd
Bda07g00648 Bda-Chr7:7818050 Bda09g00218 Bda-Chr9:3035966 1.56E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16118 PF00010 HLH 4.00E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00648 - - qsu:112032263 304.293