Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00650 ATGATTCCGGAGGTAATATCGTGCTTCCCCGGCGCAGGTCAGGATCTACGAATCTACTCCATGTCAGAAGATCAGACGAACTCAAAAGCAGAAACTCATCACTCGAGCTCTCTCCTTTACAGCCTCTCCATTCTCAAAGACAAGGTTCATCAGGTCGAATCTGTAATCACCCTCTTTCTCTCTCAAGATCAAGTAAATCCAGATTCATCTTCATTAGCAATCGCCAGCATAAACTCGCTGATTCAAGACGTCATCTTGACTGCTTCTTCCATGCTGTTAACTCCTCCAGAAACAGCTCCGTCTGGTTCTAACCCTTGTAATATGATCAACATGGATGAATCAAACCCCTTCGAAGCAAGTCATGGCCAAGAGTTCCATCCAAGTGAAACGATGTCGCTTAACTGGTGCGCGCCCGGAAGCTTCAGCAATGGCGGCCTAACAAATAACGGTCAGAACTACGATGAAAAGAAAGAAGAGCGTCAAAATCTCTCTTCTAAGAACGATGATATCATAGAATTTGATGTCGCACATCTATTAGCAAAGTACACCCATTATTGCCAAGTCTGCGGAAAAGGGTTCAAACGTGATGCGAATTTAAGAATGCATATGAGAGCACATGGCGAAGAGTATAAAACCAGTGCAGCTTTAAGCAACCCAAAGAAAAACAACGAAGAGTGGAAGACGATAGAGGATTTTCCGGGAAAATTGCCGAGCAAATACTCATGTCCACAACAAGGGTGCAGGTGGAATCAAAAACATCCCAAGTTTCAGCCTCTTAAGTCGATGATTTGCGTGAAGAATCACTACAAGAGAAGCCATTGCCCTAAAATGTACGTCTGCAAGAGGTGCAACAGAAAGCAATTCTCAGTTCTGTCTGATCTGAGAACCCACGAGAAGCACTGCGGAGATATGAAATGGCAGTGTTCTTGCGGAACTACGTTTTCCAGAAAAGATAAGTTAGTGGGTCACGTTGCTCTGTTTGTCGGTCATTCGCCATTGATGAGTTCTCGAAGGTCTGAAAGCCAAACAATTAATTTGCAGCCAGATCATGTATGA 1056 44.03 MIPEVISCFPGAGQDLRIYSMSEDQTNSKAETHHSSSLLYSLSILKDKVHQVESVITLFLSQDQVNPDSSSLAIASINSLIQDVILTASSMLLTPPETAPSGSNPCNMINMDESNPFEASHGQEFHPSETMSLNWCAPGSFSNGGLTNNGQNYDEKKEERQNLSSKNDDIIEFDVAHLLAKYTHYCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPKKNNEEWKTIEDFPGKLPSKYSCPQQGCRWNQKHPKFQPLKSMICVKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDMKWQCSCGTTFSRKDKLVGHVALFVGHSPLMSSRRSESQTINLQPDHV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7837680 7838735 + Bda025779.1 Bda07g00650 9540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00650 351 Gene3D Classic Zinc Finger 174 233 - -
Bda07g00650 351 PANTHER OS08G0562300 PROTEIN 23 342 - -
Bda07g00650 351 Pfam Zinc finger, C2H2 type 184 206 IPR013087 -
Bda07g00650 351 Gene3D Classic Zinc Finger 276 326 - -
Bda07g00650 351 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 342 IPR044300 GO:0010044|GO:0010447
Bda07g00650 351 SMART c2h2final6 278 300 IPR013087 -
Bda07g00650 351 SMART c2h2final6 184 206 IPR013087 -
Bda07g00650 351 SMART c2h2final6 240 273 IPR013087 -
Bda07g00650 351 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Bda07g00650 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Bda07g00650 351 SUPERFAMILY beta-beta-alpha zinc fingers 182 209 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00650 Bda09g00221 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00650 Bda-Chr7:7837680 Bda09g00222 Bda-Chr9:3048395 7.26E-173 dispersed
Bda07g00650 Bda-Chr7:7837680 Bda09g00221 Bda-Chr9:3046297 3.29E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16120 PF00096 zf-C2H2 0.00014 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00650 - - dzi:111302118 385.185