Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00726 ATGGCGATCCCAGATTACAAAACGGACCCGAAATTCGGAGATTTTTTACGTTCGGTTGATGCGTATTGTGCTACTCCGCCGAACAAACGGCCCCGGCACGAGAATTGCGACCCGTTCGGGAAATTCAAAGGCGTCGTTATGCAGCAAAACGGGCATTGGGGGGCACAAATTTACGCGAATCATCAGAGAATTTGGCTCGGAACGTTTAAGTCGGAGAAAGAGGCGGCGATGGCGTACGATAGTGCGGCCATAAAGCTCCGAAACGGAATCGACTCGCACCGGAATTTCCCTTGGACAGATCACAGCATGAAGGAGCCTAGTTTTCAAAACCAATTCAGCAAAGACGACGTGCTGAAAATGATCAGAGATGGTTCTTATTCTTCCAAGTTTGATGCATTTCTGACGGAAGAGTCTCGAACTGAGGAGATTGGATTGGGTTCGAAGCAAAGAACAGTGAATTTATGCGACGGAAAATGTTCAAAAATCAAACTTTTTCAGAAGGAGCTGACGCCAAGTGACGTCGGAAAGCTCAACAGGCTCGTAATCCCGAAGAAAAACGCGACGAAATATTTTCCGTTCATCCGCGAAAACGACGACAACGACGTCGAGCTAGCTTTCTACGATAAGTCGATGAAGGTTTGGAAATTCAGATACTGTTATTGGAAAAGTAGCCAGAGCTTCGTGTTCACGAGGGGCTGGAATAGATTTGTGAAGGAGAAGAAGTTGAAGGAGAACGACATAATATCGTTTTACTCGTGCGAAGAAGGCCAAAACAGCGAAGAAAATGGCTTCTCTTTCTGCTTGATCGACGTAGTTTACAGCAAAGCGAGAGAAACCGGAGCTGAAACCTGTTTGGCTGCCGAGAAAATTTGCAGCGAGACGAAGAACGTGGGATTGGAGCTGCACTTGGGGAATTTTCTCAGATTCAAACTGGACGGGAAAGAGAAGGAAAATGTTTTTGATGGGATGTATTCGATTCCAACTTGTGTTGAAGAGAAGGGTTTTAGGCTATTCGGAGTGCAAATCACCTGA 1032 46.12 MAIPDYKTDPKFGDFLRSVDAYCATPPNKRPRHENCDPFGKFKGVVMQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRNGIDSHRNFPWTDHSMKEPSFQNQFSKDDVLKMIRDGSYSSKFDAFLTEESRTEEIGLGSKQRTVNLCDGKCSKIKLFQKELTPSDVGKLNRLVIPKKNATKYFPFIRENDDNDVELAFYDKSMKVWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKENDIISFYSCEEGQNSEENGFSFCLIDVVYSKARETGAETCLAAEKICSETKNVGLELHLGNFLRFKLDGKEKENVFDGMYSIPTCVEEKGFRLFGVQIT 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8559227 8560258 + Bda025861.1 Bda07g00726 9616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00726 343 ProSiteProfiles AP2/ERF domain profile. 41 97 IPR001471 GO:0003700|GO:0006355
Bda07g00726 343 SUPERFAMILY DNA-binding pseudobarrel domain 160 256 IPR015300 -
Bda07g00726 343 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 343 IPR044800 GO:0003700
Bda07g00726 343 SMART B3_2 165 261 IPR003340 GO:0003677
Bda07g00726 343 Gene3D - 159 275 IPR015300 -
Bda07g00726 343 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Bda07g00726 343 Pfam AP2 domain 41 88 IPR001471 GO:0003700|GO:0006355
Bda07g00726 343 Pfam B3 DNA binding domain 165 254 IPR003340 GO:0003677
Bda07g00726 343 CDD B3_DNA 163 251 IPR003340 GO:0003677
Bda07g00726 343 ProSiteProfiles B3 DNA-binding domain profile. 165 272 IPR003340 GO:0003677
Bda07g00726 343 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 24 343 - -
Bda07g00726 343 Gene3D AP2/ERF domain 41 98 IPR036955 GO:0003700|GO:0006355
Bda07g00726 343 SMART rav1_2 41 103 IPR001471 GO:0003700|GO:0006355
Bda07g00726 343 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00726 K09287 RAV; RAV-like factor - qsu:111998385 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00726 Bda-Chr7:8559227 Bda10g01143 Bda-Chr10:45485378 1.18E-54 dispersed
Bda07g00726 Bda-Chr7:8559227 Bda07g01526 Bda-Chr7:28386869 5.37E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g01650 BCT 66 182 RAV Transcription Factor Family AT2G36080 76.3 2.8e-49 191.8
Bda05g01144 BCT 66 182 RAV Transcription Factor Family AT2G36080 74.6 2.0e-47 185.7
Bda07g00161 . 86 198 RAV Transcription Factor Family AT2G36080 69.0 1.6e-41 166.0
Bda03g01027 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 8.0e-41 163.7
Bda01g02092 CCT,ECH 179 288 RAV Transcription Factor Family AT2G36080 64.0 5.4e-37 151.0
Bda03g01027 BCT,CCT,ECH 21 277 RAV Transcription Factor Family AT2G46870 51.3 1.8e-59 226.5
Bda07g00161 . 86 218 RAV Transcription Factor Family AT2G46870 75.4 1.3e-54 210.3
Bda08g00078 BCT,CCT,ECH 1 221 RAV Transcription Factor Family AT2G46870 52.3 5.1e-54 208.4
Bda05g01144 BCT 43 176 RAV Transcription Factor Family AT2G46870 64.2 2.4e-43 172.9
Bda03g01650 BCT 63 176 RAV Transcription Factor Family AT2G46870 70.1 3.4e-42 169.1
Bda07g01526 CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 64.7 3.9e-38 155.6
Bda10g01143 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.3e-37 152.5
Bda03g01650 BCT 67 208 RAV Transcription Factor Family AT3G11580 63.4 5.3e-48 188.0
Bda05g01144 BCT 65 216 RAV Transcription Factor Family AT3G11580 59.4 7.6e-47 184.1
Bda03g01027 BCT,CCT,ECH 46 164 RAV Transcription Factor Family AT3G11580 61.5 6.3e-41 164.5
Bda07g00161 . 86 212 RAV Transcription Factor Family AT3G11580 58.3 2.0e-39 159.5
Bda03g01027 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 50.8 4.2e-53 205.3
Bda07g00161 . 85 227 RAV Transcription Factor Family AT3G61970 69.9 4.6e-52 201.8
Bda11g00402 CCT,ECH 56 176 RAV Transcription Factor Family AT3G61970 63.7 1.5e-39 160.2
Bda07g01526 CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 66.4 1.7e-38 156.8
Bda10g01143 . 187 299 RAV Transcription Factor Family AT3G61970 66.1 8.4e-38 154.5
Bda01g02092 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 8.4e-38 154.5
Bda07g00161 . 61 197 RAV Transcription Factor Family AT4G01500 59.0 1.4e-41 167.2
Bda05g01144 BCT 61 271 RAV Transcription Factor Family AT5G06250 55.9 7.5e-54 207.6
Bda03g01650 BCT 61 262 RAV Transcription Factor Family AT5G06250 54.0 2.8e-53 205.7
Bda03g01027 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bda07g00161 . 87 195 RAV Transcription Factor Family AT5G06250 66.4 2.8e-40 162.5
Bda07g00726 . 41 271 RAV Transcription Factor Family AT1G51120 57.7 1.0e-74 277.3
Bda10g01143 . 1 370 RAV Transcription Factor Family AT1G13260 61.2 1.1e-110 396.7
Bda07g01526 CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 61.2 1.2e-107 386.7
Bda01g02092 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 61.6 9.2e-105 377.1
Bda07g00161 . 88 195 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bda03g01650 BCT 68 179 RAV Transcription Factor Family AT1G13260 68.8 1.5e-38 157.1
Bda03g01027 BCT,CCT,ECH 44 169 RAV Transcription Factor Family AT1G13260 62.2 2.5e-38 156.4
Bda05g01144 BCT 68 175 RAV Transcription Factor Family AT1G13260 68.5 2.8e-37 152.9
Bda10g01143 . 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.2e-101 366.7
Bda01g02092 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 65.6 7.3e-99 357.5
Bda07g01526 CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.6 8.1e-98 354.0
Bda05g01144 BCT 38 175 RAV Transcription Factor Family AT3G25730 54.5 6.1e-37 151.8
Bda07g01526 CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.5 2.0e-115 412.5
Bda10g01143 . 1 371 RAV Transcription Factor Family AT1G68840 59.9 9.7e-110 393.7
Bda01g02092 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.3 2.2e-101 365.9
Bda03g01027 BCT,CCT,ECH 11 167 RAV Transcription Factor Family AT1G68840 50.6 1.4e-39 160.6
Bda07g00161 . 87 200 RAV Transcription Factor Family AT1G68840 68.1 5.3e-39 158.7
Bda03g01650 BCT 67 175 RAV Transcription Factor Family AT1G68840 68.8 3.4e-38 156.0
Bda05g01144 BCT 43 181 RAV Transcription Factor Family AT1G68840 54.7 5.8e-38 155.2
Bda10g01143 . 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.2e-101 366.7
Bda01g02092 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 65.6 7.3e-99 357.5
Bda07g01526 CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.6 8.1e-98 354.0
Bda05g01144 BCT 38 175 RAV Transcription Factor Family AT3G25730 54.5 6.1e-37 151.8
Bda07g00726 . 41 271 RAV Transcription Factor Family AT1G51120 57.7 1.0e-74 277.3
Bda03g01650 BCT 67 208 RAV Transcription Factor Family AT3G11580 63.4 5.3e-48 188.0
Bda05g01144 BCT 65 216 RAV Transcription Factor Family AT3G11580 59.4 7.6e-47 184.1
Bda03g01027 BCT,CCT,ECH 46 164 RAV Transcription Factor Family AT3G11580 61.5 6.3e-41 164.5
Bda07g00161 . 86 212 RAV Transcription Factor Family AT3G11580 58.3 2.0e-39 159.5
Bda07g00161 . 61 197 RAV Transcription Factor Family AT4G01500 59.0 1.4e-41 167.2
Bda03g01650 BCT 66 182 RAV Transcription Factor Family AT2G36080 76.3 2.8e-49 191.8
Bda05g01144 BCT 66 182 RAV Transcription Factor Family AT2G36080 74.6 2.0e-47 185.7
Bda07g00161 . 86 198 RAV Transcription Factor Family AT2G36080 69.0 1.6e-41 166.0
Bda03g01027 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 8.0e-41 163.7
Bda01g02092 CCT,ECH 179 288 RAV Transcription Factor Family AT2G36080 64.0 5.4e-37 151.0
Bda05g01144 BCT 61 271 RAV Transcription Factor Family AT5G06250 55.9 7.5e-54 207.6
Bda03g01650 BCT 61 262 RAV Transcription Factor Family AT5G06250 54.0 2.8e-53 205.7
Bda03g01027 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bda07g00161 . 87 195 RAV Transcription Factor Family AT5G06250 66.4 2.8e-40 162.5
Bda03g01027 BCT,CCT,ECH 21 277 RAV Transcription Factor Family AT2G46870 51.3 1.8e-59 226.5
Bda07g00161 . 86 218 RAV Transcription Factor Family AT2G46870 75.4 1.3e-54 210.3
Bda08g00078 BCT,CCT,ECH 1 221 RAV Transcription Factor Family AT2G46870 52.3 5.1e-54 208.4
Bda05g01144 BCT 43 176 RAV Transcription Factor Family AT2G46870 64.2 2.4e-43 172.9
Bda03g01650 BCT 63 176 RAV Transcription Factor Family AT2G46870 70.1 3.4e-42 169.1
Bda07g01526 CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 64.7 3.9e-38 155.6
Bda10g01143 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.3e-37 152.5
Bda03g01027 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 50.8 4.2e-53 205.3
Bda07g00161 . 85 227 RAV Transcription Factor Family AT3G61970 69.9 4.6e-52 201.8
Bda11g00402 CCT,ECH 56 176 RAV Transcription Factor Family AT3G61970 63.7 1.5e-39 160.2
Bda07g01526 CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 66.4 1.7e-38 156.8
Bda10g01143 . 187 299 RAV Transcription Factor Family AT3G61970 66.1 8.4e-38 154.5
Bda01g02092 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 8.4e-38 154.5
Bda10g01143 . 1 370 RAV Transcription Factor Family AT1G13260 61.2 1.1e-110 396.7
Bda07g01526 CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 61.2 1.2e-107 386.7
Bda01g02092 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 61.6 9.2e-105 377.1
Bda07g00161 . 88 195 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bda03g01650 BCT 68 179 RAV Transcription Factor Family AT1G13260 68.8 1.5e-38 157.1
Bda03g01027 BCT,CCT,ECH 44 169 RAV Transcription Factor Family AT1G13260 62.2 2.5e-38 156.4
Bda05g01144 BCT 68 175 RAV Transcription Factor Family AT1G13260 68.5 2.8e-37 152.9
Bda07g01526 CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.5 2.0e-115 412.5
Bda10g01143 . 1 371 RAV Transcription Factor Family AT1G68840 59.9 9.7e-110 393.7
Bda01g02092 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.3 2.2e-101 365.9
Bda03g01027 BCT,CCT,ECH 11 167 RAV Transcription Factor Family AT1G68840 50.6 1.4e-39 160.6
Bda07g00161 . 87 200 RAV Transcription Factor Family AT1G68840 68.1 5.3e-39 158.7
Bda03g01650 BCT 67 175 RAV Transcription Factor Family AT1G68840 68.8 3.4e-38 156.0
Bda05g01144 BCT 43 181 RAV Transcription Factor Family AT1G68840 54.7 5.8e-38 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16124 PF02362 B3 3.90E-25 CL0405 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00726 Bda_Chr07 FPKM 2.624233 2.558647 5.605301 5.027764 14.337 17.047106 15.238837 1.90708 0.786243