Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00734 ATGGAGAGCCTGATGATGGTCGAGGAAACATTGGGTGACGGTTCAGATTTAGATGTTGATGACATAAGATGTGAAAACATTGAGGACAAAGATGTTAGTGATGAAGAAATTGAAGCAGAAGAATTGGAGAGACGAATGTGGAAGGATCGTATTAAACTCAAAAGGATCAAGGAGAAGCAAAAGCTTGCAGCCCAACAAGCTGCTGAAAAGCTAAAGCCTAAGCAAGCCACTGACCAGGCTCGTAGAAAGAAAATGTCTCGAGCTCAAGATGGGATCCTCAAGTATATGTTGAAGCTGATGGAAGTGTGCAAGGCTCGTGGATTCGTGTATGGTATAATTCCAGAGAAGGGAAAACCAGTTAGCGGTTCTTCCGATAACATTAGAGCTTGGTGGAAAGAAAAGGTTAAATTTGACAAAAATGGCCCGGCAGCCATAGCCAGGTATGAAGCCGATTGTCTTGCAAGAGGAGAAGCAGATAACAGCGGAAATGGAAACTCGCAGAGTATTCTCCAAGATCTACAAGATGCAACTCTAGGCTCTCTTTTATCTTCCTTGATGCAACATTGTGACCCCCCTCAGCGGAAGTACCCTTTAGAAAAGCAAGTTCCACCGCCATGGTGGCCAAACGGGAACGAAGATTGGTGGGTTAAAATTGGTCTACCCCATGGCCAGAGTCCTCCATATAAAAAGCCTCACGATTTGAAGAAAATATGGAAAGTTGGTGTTTTAACGGCTGTGATAAAGCATATGTCGCCCAATATTGCAAAAATTAGGAGACATGTTCGACAGTCGAAGTGCTTGCAAGACAAGATGACGGCAAAGGAGAGTGCAATTTGGTTGGGGGTTTTGAAACGAGAGGAATCGCTCATTCGGCAGCCGAGCAGTGACAATGGGATGTCTGGAATCACAGAAACTCCTGCAGGAGGATGTGGTGATAAGCAAGTGGCAGCAATCAGTGGAAGTGATTATGATGTCGATGGTGTGGATGACTGCATGGCTTCAGTGTCGTCGAAAGATGAGAGGAGAAATCAGTTGATCGATGCTCAACCGTTGAGCTGTCTACCTGTAACCACTTCTTATCCTGCTGAAGAAAAAGATCAAGCTGTAAAGAAATCTCGAAGTAAAAGGGCTCGTACACAAGCAAATTCTCCGCCATTGACATCCGAAAACCAGCAACTAAATGTTGAGCCAAGAACCATCCTACCCGATATAAATAACTCAGATTTTCCATTGGTGGGATTCGAGATTCCGGGAGTTCAGCTGGCAAGAGAGGCAGCCACTACAACTTTGAGGTCGCTCGAAAGGGATTCAACCCCCCAACGTCAACCACCAGATTTAGAATACAACCATTTCTCTTCGGTACCATTGGAAAATGTTTCTACGCAAAATATATATGACGGTGGAAGGTCCTTGACATATCCCATGACGCAAAATTTGAAGATCAATCATGGAAATATGTACAATTTCTATAGTCCAACAGTGGAGTACAGGCCTAGTCACTATGGGCAGCAACCTCAGATTACTACTCAAATTGTGCAAGAGGATGAGGGATGCAGTATACCTTCTCTACATAGTAATCCAAACGAGATCAGCGGAGTAGACTTCAATTATTACGCGAAAGACCCGTTACCGGGTGAACAAAATAGGCCTGGTGATGCACAGTTTGGATCTCCGGGCCACAACTTATCATTAGATTATGGAGCGTTAAACAGTCCATTCGACCTCGGGATTGATGGGATGGGGTCGTTTGATGATCTTTTACTCGACGATGATTTGATTCAATACTTCGGAGCATAG 1797 44.35 MESLMMVEETLGDGSDLDVDDIRCENIEDKDVSDEEIEAEELERRMWKDRIKLKRIKEKQKLAAQQAAEKLKPKQATDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAIARYEADCLARGEADNSGNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKQVPPPWWPNGNEDWWVKIGLPHGQSPPYKKPHDLKKIWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLGVLKREESLIRQPSSDNGMSGITETPAGGCGDKQVAAISGSDYDVDGVDDCMASVSSKDERRNQLIDAQPLSCLPVTTSYPAEEKDQAVKKSRSKRARTQANSPPLTSENQQLNVEPRTILPDINNSDFPLVGFEIPGVQLAREAATTTLRSLERDSTPQRQPPDLEYNHFSSVPLENVSTQNIYDGGRSLTYPMTQNLKINHGNMYNFYSPTVEYRPSHYGQQPQITTQIVQEDEGCSIPSLHSNPNEISGVDFNYYAKDPLPGEQNRPGDAQFGSPGHNLSLDYGALNSPFDLGIDGMGSFDDLLLDDDLIQYFGA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8683235 8685031 + Bda025869.1 Bda07g00734 9624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00734 598 Gene3D - 159 298 IPR023278 GO:0003700|GO:0005634
Bda07g00734 598 Gene3D - 74 149 IPR023278 GO:0003700|GO:0005634
Bda07g00734 598 Coils Coil 39 59 - -
Bda07g00734 598 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Bda07g00734 598 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Bda07g00734 598 MobiDBLite consensus disorder prediction 431 450 - -
Bda07g00734 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 597 - -
Bda07g00734 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 597 IPR006957 GO:0005634
Bda07g00734 598 MobiDBLite consensus disorder prediction 64 83 - -
Bda07g00734 598 MobiDBLite consensus disorder prediction 357 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00734 K14514 EIN3; ethylene-insensitive protein 3 - qsu:112002894 768.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00734 Bda-Chr7:8683235 Bda09g00361 Bda-Chr9:4619914 7.67E-125 dispersed
Bda07g00734 Bda-Chr7:8683235 Bda07g00800 Bda-Chr7:9506944 3.43E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g153 Blo03g00996 . . . . . Bma14g00784 . . Cmo11g00844 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00508 . . . . . Bda07g00734 . . Bpe11g00907 . . . . . Cma11g00834 . . . . Cpe04g00932 . . . . . . . Cla03g01291 Cam03g1360 Cec03g1399 Cco03g1385 Clacu03g1384 Cmu03g1950 Cre03g1623 . Csa01g03142 Chy02g01432 Cme02g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00800 . 2 613 EIL Transcription Factor Family AT2G27050 60.6 4.0e-193 671.4
Bda09g00361 . 1 607 EIL Transcription Factor Family AT2G27050 59.3 2.5e-187 652.1
Bda15g00419 . 45 479 EIL Transcription Factor Family AT2G27050 59.4 3.3e-139 492.3
Bda07g00734 . 46 382 EIL Transcription Factor Family AT2G27050 54.7 5.0e-95 345.5
Bda07g00734 . 46 574 EIL Transcription Factor Family AT1G73730 53.5 1.7e-140 496.5
Bda07g00800 . 40 333 EIL Transcription Factor Family AT1G73730 62.9 5.1e-105 378.6
Bda09g00361 . 37 300 EIL Transcription Factor Family AT1G73730 67.3 8.4e-100 361.3
Bda15g00419 . 45 289 EIL Transcription Factor Family AT1G73730 66.3 7.6e-93 338.2
Bda07g00800 . 3 613 EIL Transcription Factor Family AT3G20770 61.6 3.7e-205 711.4
Bda09g00361 . 2 607 EIL Transcription Factor Family AT3G20770 60.1 3.1e-199 691.8
Bda15g00419 . 45 467 EIL Transcription Factor Family AT3G20770 61.8 2.8e-144 509.2
Bda07g00734 . 46 327 EIL Transcription Factor Family AT3G20770 61.9 6.0e-94 342.0
Bda07g00734 . 83 288 EIL Transcription Factor Family AT5G65100 61.6 1.8e-70 263.8
Bda07g00800 . 32 298 EIL Transcription Factor Family AT5G10120 57.9 1.9e-84 310.1
Bda09g00361 . 42 297 EIL Transcription Factor Family AT5G10120 57.5 1.4e-82 303.9
Bda07g00734 . 46 290 EIL Transcription Factor Family AT5G10120 54.0 4.1e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16125 PF04873 EIN3 4.90E-125 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00734 Bda_Chr07 FPKM 2.097792 3.077177 0.984132 0.666681 4.293654 4.292087 3.557057 0.776195 0.0