Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00774 CTTCTGCTTCTCAATTTCTCAATCGAAGATATGATCGAGTTGGATGAAAGTATAGAAGGAGAGTACGTCGAATCCAACGACTTATACTTCAAAAGGATCGGAGAACCTGTTCCCATTAAACCTTGCGATCCAGTTTTTGATTTGGAAACCCTTCCAGCTCAGCCTCTCGCCGTCTCCGAACGATTTCATGTCGTCTGCGTTGCCCATACAACTGGGTTTTGTGTCGCGAGGACTAAGGATGTCGTGGCTTCAGCGAAAGAGATTAAAGACAAGGGAAATGGTTCTTCTATATTGGATTTGAGTATCGTTGATGTTCCGGTGGGCAAGGTTCATATTTTGGCTTTCTCCTCTGACAATTCAATACTTGCTGCATCTGTTTCTGGAGATACTCATTTTTTTTCAACTTCTTCACTCATCAATAAGGAGCGGGAACCGTCATTCTCCTGTACTCTTAATGATGGGAGCTCCGTCAAAGATCTCAAATGGTCCCCGAAATCAGAAAATTCATATCTTGTTCTTTCAAACGATCAGAATCTCTATCATGGAATGCTTGATGTCCCACTTAAAGATTTGATGAATGATGTTGATGCTGTCGAATGGAGTACCAAGGGAAATTCTATCGCTGTTGCGCGAAACAGGATTATCAGCATTTTATCATCCAGATTCAAAGAAAGGTTTTCCATGTCACTATTGAATGAGTCACAGATTGGAGTTTCCAACCGGAACGGCACAATAAAAGTTGACGCAATGAAGTGGGTGCGTGCTGATTGCATAATTCTAGGATGCTTTAAAGTGACTGAAGCAGGAGCCGAAGAAGATTATCTCATCCAAATAATCAGAAGTAAAGATGGGAAACTCACTGAGGCTTCGTCAGAAAGAGTTGTGTTGTCATTCAGGGACGTTTTTCTTGGTTTAATTGATGACATTGTGCCCATCGGAACTGGACCTTATTTATTCTTGAGCTACGTGGAAAAAGGCGCACTTGCAATTATGGCTAATAGAAAGAATACAGATCAGCATGTTGTTTTACTTGGTTGGTCACTCGGGGCCGAAAAGGGTGAGGCTGCTGTTATAGAAATTGAAAGAGATACATTGCTACCAAGGATTGAACTTCAAGAAAATGGTGATGATAATTTGATCTTGGGGCTATGCACGGATAAAGTTTCCATCTCTGAAAAAATTGAAGTGCAACTTGGTGCTGGTGAACTAACAGAACTCTCACCATTTTGCGTTCTTATGTGTCTCACTCTAGAGGGAAGGCTTAACATGTTTCATTCAATTTTAACGACAATTTATTACCTGACATCTATTGAAATGCAACCCATCCGGTCTTCAGAACCAGGAAAACAGGAATTAGCAGAAAATAGAGTGCGTAATAAGTTGCTGGAGTCAGACGATATGACGATTAGCAAGACAAGTGACCTAAAACATTCTGGTACAGATCAGAGTACAATTTTTCCGTCTGCTGCAAATAAAACTTCCAATGTAGAAAGTCATACTAAATTTTTATCCGTAGATTCCTTTTCACAACCCTCGAAGTTTTCTTTCCCAGAAAAATCTATTCAAAGCTCAAATGACTTCAGTAAGTCTGTTCAGAAATCTGCAGTGTTTAGATCTAACTCCTTGTCAACAGAGGGAGAAATGTTGGCTGATGACTCCAATCAATCACGCCCTGAGAATCCAAAAAATAGTGTTCAAGAAATTGGAGGAATAACAAACATGGGGACAACTGGCTTTCAGAGTGGTTCTGAGTTGTATGGCGGAATGTTTACATTTTCCAAGGAAGTCAAATCAACATCTTCCCCTTTATCATCCAAACTTTCACAAAGCAGCATGTTTGAGAATCCTGATCATAATTTTGGCACCAATAAAGTGTCAGAACTTTTTCCTGGGAAGACTTCTCCTTCAAATAATGCTACTAGTTCAACAGTCATCCCTTCTGGTATGCCATATCAGGGTAAAGGATCACTAACATCTACAGCTTTGTCAACTCAGACTCAGGGAATACCAACATCATCAGGGGTTACTAAAATTGAATCACTTCCGACGATGCATGGTGCACAGATTCAATTGCAAATGAACTTCCCATTAGAGAAGTGTGAGCAAACTCACATGCCTCATCCTCTTAAGGAAAGTTTCCGAACTGCATCTCTATCAAGATTAATAAGATCTGAGCAAAACTTGTTGAAAATTAAACAGATGACCAGAGAATTAGACATGCTTCTGGAATCTATTGAAAAACCAGGTGGTTTTGTAGATGCCTGCTCTGTGTTTCAGAAACATTCTGTTGAAGCATTGGAAAAGGGTGTTGATGCTCTTTCTGTGAAATGCCAAATGTGGAATTGTACAATAGATCAGCGCCTTCAAGAAATCCAAAATCTTCTTGATAGTACATTACAAGTTTTGGCAAAAAAAATTTACATGGAAGGCATAGTAAAACAAGCTTCTGATAGTCACTATTGGGAACTCTGGGATCGTCAAAAGTTAAGTTGTGAACTAGAAATGAAACAACAACATATAGTAAAGATGGATAAGGATATGACCAACCAGTTAATTGAGTTAGAAAAGCATTTCAATGGCCTTGAACTTAATACTTTTGGTGAAAATAGTGGAGCTCGTGATGAAAGATCTTTGCAGAGTAAATGTGGATTTTCAAGGTTGGCATACTTTGTTTCAGTTGAATACTACAATATCTTCTTGGAGGATAAAATGAACTTTGAGCATTGCTTTCCTGACCTTATAAATGAGGTTAAAATTTTACTGAATTTGGTTAGTTTTGAACCTACAAAAACTACTGTTCAAAGGAGGAGTTTGCAAGAAAATCAAAGGACTAGTGATCGGCGATCATACTTAAATAAGAAACTTTCTAGTCCTCTCAATATCGAGAAAGTAGTTGCTCCCCGGGAAGATTCTATAAAACCTTCAGTTTTAATGCCATTATCTGAAATCCCAGGTAAGATGTTTGCACTCGATAGAAACAAGATTGGACATTTTTCTTTGCCACCTGGATCTCAATATCCGAATTCAACACAAAAGAACAGCTTGAGTCAAGCTTATGACGCCAATGGGGAAAAATCAAGGCCAGGCCAGTTTTTATTTGAGAAGACTTCATCCATTGATATTGTTTCACAAACTGGCGCCAAATCTTTTCGAGAATCAGAAACGAACCTTGACAAGAAACCATCAATATTTTCAATGTCACCCTCACAGGCAACGCCATTGTTGAGAAATCTTGAAATGTCAAATTTGGACAGGAAGGAGTTAGTTTTTCCTGGTTTATCAAGTGGAAATGTCAATATTGTTTCTGCGTCAACGGGCTCACTTGTTGAGTCGGCAAAAGAGCTTGAATCTCACAAAACTGCTGCATCTGTAACAGGTTCTGTTCTAGGCCAAGACAAGAGACAGTCTGATGATAATGTGTTTTCTTCAACTTTTTCTTTGTCACGGGCATCACCATTTTCAATGGTTAATTCAACGTCTTCTCCATCTTCTATGACAAGTTCTGCTCTATCAAGTAATTCTACATTTGCAGGCTCTGACAGAAAAGCATCGACCACTGGATCATCATCAGGCTTTTCCCCTCCAATTGTTTCTGCTTCGGGTTCTTTTGCTTTCCAAACAACTAAACCATTGGTGTTCCCACCTACTCCTGCTCAACAATCAAGTCCAGCATCAGATTCTACCAAAACAGAGCCTCAACTTAGTTCAACAGTTGATTTGGAAATTACCAAACAAGAACCAACTTTAGAGACTAAATCTCCGACACGAATAGTCAGTCTAAAGCCTGTTCCTTCAGGAATATCTGGTGCTGAAAGCTCATCAATACTGAAATCTGATAGCCTTCTCAGTTCTCAGGCGATGACAACTTTCATACCAAATGCTACATCAAATTCTCAACCACAGCAACCTTCTGGTATTTTTTCACAAATACGGAACACAACATCTGAGACTGTTGCTGCAGAGAAACAGTTAGAAATTCCTATTCCTCAGGATGACAGTATGGATGAGGAGGCACCTGAGTCAAACAGTACAGGTGAACTTAATTTGGGTAGTCTTGGTGGATTTGGAATTAGTTCGACTATAATCCCAACTGCCCCTAAAGCAAACCCATTTGGTGGTTCATTTGGAAATGCTGCAATACCAACAATGAGTTCTCCGTTTTCCAAGACAGTTCCTAGTGGAGAACTGTTCCGCCCTGCATCTTTTAACTTTCAATCTCCATTATCTTCTCAGTCCTCTCAGTCAACAAGTTCCACAGCCCTCTCTGGTGGCTTTGGCAGTGGAGTGGCTGGTCAATCTGCTAATCAAGGTGGGTTTGGCCAGCCGTCCCAGATTGGATCCAGACTGCAAGCACTGGGATCGGTTTTAGGTACTTTTGGACAGTCACGGCAGCTTGGTCCAACTCCTCAAGGAACCAATTCAGGATCTTCCAGTGGATTTGGTGGCGGTTTTGCTGGGATGAAACCTATGGGTGGCTTTTCAAATGGTTTGGCATCAGGTGGTGGTGGATTTGGTGGTTTGGCATCGGGTGGTGGTGGAGGATTTGCTGCTGTGGCCTCAGGTGGTGGGTTTTCAGGAGTAGCTGCTGGCGGTGGATTTCAAGCAGTAGGTGGCGGGTTTGGAGCTTTCAGCAACACCCCTCAGAGCACAGGCGGTTTCTCGGCTTTTGGTAGTGGTGCAGGAGGAAGTGGCGCTCCTCCGGAGCTCTTCACACAGATTAGAAAGTAG 4728 41.01 LLLLNFSIEDMIELDESIEGEYVESNDLYFKRIGEPVPIKPCDPVFDLETLPAQPLAVSERFHVVCVAHTTGFCVARTKDVVASAKEIKDKGNGSSILDLSIVDVPVGKVHILAFSSDNSILAASVSGDTHFFSTSSLINKEREPSFSCTLNDGSSVKDLKWSPKSENSYLVLSNDQNLYHGMLDVPLKDLMNDVDAVEWSTKGNSIAVARNRIISILSSRFKERFSMSLLNESQIGVSNRNGTIKVDAMKWVRADCIILGCFKVTEAGAEEDYLIQIIRSKDGKLTEASSERVVLSFRDVFLGLIDDIVPIGTGPYLFLSYVEKGALAIMANRKNTDQHVVLLGWSLGAEKGEAAVIEIERDTLLPRIELQENGDDNLILGLCTDKVSISEKIEVQLGAGELTELSPFCVLMCLTLEGRLNMFHSILTTIYYLTSIEMQPIRSSEPGKQELAENRVRNKLLESDDMTISKTSDLKHSGTDQSTIFPSAANKTSNVESHTKFLSVDSFSQPSKFSFPEKSIQSSNDFSKSVQKSAVFRSNSLSTEGEMLADDSNQSRPENPKNSVQEIGGITNMGTTGFQSGSELYGGMFTFSKEVKSTSSPLSSKLSQSSMFENPDHNFGTNKVSELFPGKTSPSNNATSSTVIPSGMPYQGKGSLTSTALSTQTQGIPTSSGVTKIESLPTMHGAQIQLQMNFPLEKCEQTHMPHPLKESFRTASLSRLIRSEQNLLKIKQMTRELDMLLESIEKPGGFVDACSVFQKHSVEALEKGVDALSVKCQMWNCTIDQRLQEIQNLLDSTLQVLAKKIYMEGIVKQASDSHYWELWDRQKLSCELEMKQQHIVKMDKDMTNQLIELEKHFNGLELNTFGENSGARDERSLQSKCGFSRLAYFVSVEYYNIFLEDKMNFEHCFPDLINEVKILLNLVSFEPTKTTVQRRSLQENQRTSDRRSYLNKKLSSPLNIEKVVAPREDSIKPSVLMPLSEIPGKMFALDRNKIGHFSLPPGSQYPNSTQKNSLSQAYDANGEKSRPGQFLFEKTSSIDIVSQTGAKSFRESETNLDKKPSIFSMSPSQATPLLRNLEMSNLDRKELVFPGLSSGNVNIVSASTGSLVESAKELESHKTAASVTGSVLGQDKRQSDDNVFSSTFSLSRASPFSMVNSTSSPSSMTSSALSSNSTFAGSDRKASTTGSSSGFSPPIVSASGSFAFQTTKPLVFPPTPAQQSSPASDSTKTEPQLSSTVDLEITKQEPTLETKSPTRIVSLKPVPSGISGAESSSILKSDSLLSSQAMTTFIPNATSNSQPQQPSGIFSQIRNTTSETVAAEKQLEIPIPQDDSMDEEAPESNSTGELNLGSLGGFGISSTIIPTAPKANPFGGSFGNAAIPTMSSPFSKTVPSGELFRPASFNFQSPLSSQSSQSTSSTALSGGFGSGVAGQSANQGGFGQPSQIGSRLQALGSVLGTFGQSRQLGPTPQGTNSGSSSGFGGGFAGMKPMGGFSNGLASGGGGFGGLASGGGGGFAAVASGGGFSGVAAGGGFQAVGGGFGAFSNTPQSTGGFSAFGSGAGGSGAPPELFTQIRK 1575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9195141 9213328 + Bda025912.1 Bda07g00774 9664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00774 1575 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP214 ISOFORM X1 922 1575 IPR044694 GO:0006405|GO:0017056
Bda07g00774 1575 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP214 ISOFORM X1 12 886 IPR044694 GO:0006405|GO:0017056
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1459 1480 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 542 573 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1152 1192 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1405 1424 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1002 1023 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1325 1349 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1459 1482 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 473 492 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1554 1575 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1208 1236 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 999 1027 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 1120 1139 - -
Bda07g00774 1575 SUPERFAMILY Nucleoporin domain 20 425 - -
Bda07g00774 1575 MobiDBLite consensus disorder prediction 468 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00774 K14317 NUP214, CAN; nuclear pore complex protein Nup214 - jre:109003767 964.526
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g9 . . . . . . Bma14g00740 . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0376 . . . . . . . . . Bda07g00774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009649 1 2 1 1 0 1 1 0 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00774 Bda_Chr07 FPKM 5.371521 6.14463 7.175239 7.524938 23.726082 26.587519 24.486353 1.927295 2.336184