Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00778 ATGGCAAGTGCTTTCACGACAATGTCTTCTGTTGGTTCTCTTGCTGCTCCCAGCATTACCGATAAGAAACTTATTTTGACGACAGAAAAGCTCTCTTCTGCCTCTTCCATTTCCTCATTCAGAGTCGGTAGGCAACGCAATGCGGTTCTCAGGAGAAATATGTCTCCTAAGATCTATGCCATGGCAAAAGAGTTGCACTTCAACAAAGATGGAACAGCTATTAAAAAATTACAGAATGGTGTCAACAAGCTTGCAGACTTAGTTGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTTTGGAGAGCAAATATGGCTCCCCAAAGATTGTAAACGATGGGGTGACTGTTGCGAAAGAGGTTGAACTGGAGGACCCGGTAGAGAACATCGGTGCTAAGTTGGTGAGACAGGCTGCTGCCAAGACCAATGACTTAGCTGGTGATGGCACTACAACTTCAGTTGTTCTGGCACAGGGTATTATCACTGAAGGTGTCAAGGTCGTAGCAGCTGGTGCAAACCCAGTTTTGATCACCAGAGGGATTGAAAAAACTGCTAAAGCTCTGGTTGCTGAACTTAAATTGATGTCAAAGGAGGCAAGAATGAGATACGAATTGGCTGATGTTGCCGCAGTTAGTGCTGGAAATAATTATGAAGTGGGAAACATGATAGCTGAAGCCATGAGTAAGGTGGGAAGAAAGGGGGTGGTGACACTCGAAGAGGGAAAAAGTGCCGAAAACAGTCTCTATGTCGTTGAAGGAATGCAATTCGACCGGGGTTACATCTCACCTTACTTTGTTACAGATAGTGAGAAAATGTCTGTGGAATATGAGAACTGCAAGTTAATTCTTGTCGACAAGAAGATAACAAATGCAAGGGATCTTATTAATATTTTGGAGGATGCTATTAGAAGTGGATACCCAGTATTAATAATTGCGGAGGACATCGAGCAAGAAGCTTTGGCTACGCTAGTTGTAAACAGGCTTAGAGGTGCTTTGAAAATCGCTGCACTTAAAGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGACATAGCTATTTTAACTGCAGGAACTGTGGTAAGAGAAGAGGTTGGGCTTACATTAGACAAAGTGGGAAAGGAGGTCCTTGGTCATGCTTCTAAAGTTGTCCTTACAAAGGATTACACAACTATTGTTGGTGATGGTAGCACCCAGGAAGCGGTCAACAAGCGCGTAGCACAAATTAGAAATCTTATCGAGGTAGCGGAGCAAGACTATGAAAAAGAGAAACTTAACGAAAGAATTGCTAAACTTTCTGGTGGTGTTGCAGTGATACAGGTTGGAGCACAAACTGAAACTGAGCTTAAAGAAAAGAAACTGCGAGTTGAAGATGCTCTCAATGCGACGAAGGCGGCCGTTGAGGAGGGTATTGTTGTTGGTGGTGGATGTGCCTTGTTAAGACTTGCATCAAAGGTGGATGCTATCAAAGCCAGCTTCGACAACGATGAGGAAAAGGTTGGTGCCGATATTGTCAAGAGAGCTCTAAGTTATCCACTAAAATTGATAGCCAAAAATGCTGGTGTGAATGGAAGTGTTGTTAGTGAGAAGGTGCTGTCATCTGACGACTTCAGATATGGTTACAACGCAGCTACCGGAAAATACGAAGATTTGATGGCTGCTGGAATAATTGACCCGACTAAGGTTGTGAGATGCTGCCTAGAGCATGCAGCCTCTGTGGCCAAAACCTTCTTGATGTCAGATTGTGTGGTGGTAGAGATAAAGGAACCCGAGCCTATTCCGGCCGGCAACCCCATGGACAATTCAGGTTCTTTATCATTTATGATAACTTTTACAAAATTTGGAAATGTCATATCTAGTGTGTTCTTTTCCCAGTTCGATCTTCGGGCGAATCGGTGTTAA 1905 43.78 MASAFTTMSSVGSLAAPSITDKKLILTTEKLSSASSISSFRVGRQRNAVLRRNMSPKIYAMAKELHFNKDGTAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGIITEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEARMRYELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLILVDKKITNARDLINILEDAIRSGYPVLIIAEDIEQEALATLVVNRLRGALKIAALKAPGFGERKSQYLDDIAILTAGTVVREEVGLTLDKVGKEVLGHASKVVLTKDYTTIVGDGSTQEAVNKRVAQIRNLIEVAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCALLRLASKVDAIKASFDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDDFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPIPAGNPMDNSGSLSFMITFTKFGNVISSVFFSQFDLRANRC 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9326265 9329792 + Bda025917.1 Bda07g00778 9668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00778 634 Gene3D GroEL 253 434 IPR027409 -
Bda07g00778 634 ProSitePatterns Chaperonins cpn60 signature. 466 477 IPR018370 GO:0005524|GO:0006457
Bda07g00778 634 TIGRFAM GroEL: chaperonin GroL 62 590 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PRINTS 60kDa chaperonin signature 411 436 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PRINTS 60kDa chaperonin signature 459 480 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PRINTS 60kDa chaperonin signature 329 352 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PRINTS 60kDa chaperonin signature 88 114 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PRINTS 60kDa chaperonin signature 144 171 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 Gene3D - 198 471 IPR027410 -
Bda07g00778 634 CDD GroEL 63 587 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 599 - -
Bda07g00778 634 Gene3D - 72 586 IPR027413 -
Bda07g00778 634 Pfam TCP-1/cpn60 chaperonin family 84 588 IPR002423 GO:0005524
Bda07g00778 634 PANTHER BNAC06G41650D PROTEIN 1 599 - -
Bda07g00778 634 Hamap Chaperonin GroEL [groEL]. 61 609 IPR001844 GO:0042026|GO:0140662
Bda07g00778 634 Coils Coil 400 427 - -
Bda07g00778 634 SUPERFAMILY GroEL equatorial domain-like 70 290 IPR027413 -
Bda07g00778 634 SUPERFAMILY GroEL apical domain-like 246 437 IPR027409 -
Bda07g00778 634 SUPERFAMILY GroEL equatorial domain-like 433 588 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00778 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - qsu:111998146 1031.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00778 Bda09g00347 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01108 Bda-Chr3:11273466 Bda07g00778 Bda-Chr7:9326265 1.24E-165 dispersed
Bda07g00778 Bda-Chr7:9326265 Bda13g00728 Bda-Chr13:8785323 0 dispersed
Bda10g01116 Bda-Chr10:45153113 Bda07g00778 Bda-Chr7:9326265 0 transposed
Bda07g00778 Bda-Chr7:9326265 Bda09g00347 Bda-Chr9:4408881 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g23 . Blo03g01403 . . . . . Bma07g01362 Cmo10g00839 . Cma10g00809 . . . Sed08g0970 Cpe05g00805 . Bhi02g01722 Tan09g1009 Cmetu02g1328 . Hepe09g0981 . . . . . . . . . . . . . Lsi06g00390 . . . . . Bda07g00778 Bda09g00347 . Bpe11g00952 . . . . . Cma11g00774 . . . . Cpe04g00986 . . . . . . . Cla03g01403 Cam03g1482 Cec03g1520 Cco03g1515 Clacu03g1504 Cmu03g2061 Cre03g1735 . Csa01g03042 Chy02g01320 Cme02g00353
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00778 Bda_Chr07 FPKM 0.0 0.167771 0.151611 0.170109 0.272181 0.471686 0.375735 1.706373 1.660276