Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00800 ATGATGATGATGTTTGAGGAGATGGGATTTTGTGGCGACTTGGATTTTCTGTCTGCACCTCCTGGAGAAGGAGATATGGCTGGTCCACAGACTGAACCTGAGACTACTGTGGACGATGATTATTCAGATGAAGAGATCGATGTTGATGAGCTCGAGAGGAGGATGTGGAGGGACAAAATGCGCCTGAAACGGCTGAAAGAGCAGAGCAAAGGGAAGGAAGGGATCGATATGGCAAAACAGCGCCAATCTCAAGAACAAGCGAGGAGGAAGAAGATGTCTAGGGCCCAAGATGGGATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGCAAAGCTCAGGGGTTTGTATATGGGATTATTCCAGAGAAGGGGAAACCCGTTACTGGAGCATCGGATAATCTCCGAGAATGGTGGAAAGATAAAGTGAGATTTGATCGAAACGGACCAGCTGCCATAGCCAAGTACCAAGCTGACAATGCAATTCCGGGCAAAAACGAAGGCTGCAATTCGATTGGTCCAACTCCTCACACCCTGCAAGAACTTCAAGACACTACTCTAGGATCTCTCTTATCGGCGCTAATGCAGCATTGTGATCCGCCCCAGAGGCGGTTTCCGTTGGAGAAAGGCATTCCTCCTCCATGGTGGCCGACTGGAAACGAGGACTGGTGGCCCCAATTGGGTTTGCAGAAAGATCAAGGCGGTCCACCTTATAAGAAGCCTCATGATTTGAAGAAAGCGTGGAAAGTGGGTGTTCTCACTGCAGTTATTAAGCATATGTCTCCTGATATTGCTAAGATTCGAAAGCTTGTGAGGCAGTCCAAGTGCCTGCAGGACAAGATGACTGCCAAAGAGAGTGCAACTTGGCTTGCCATTATCAACCAGGAGGAGGTCCTGGCGCGAGAGCTTTACCCTGGCTGTTGCCCTCCTCTGTCGTCAAATGGCGGAAGTGGGTCTTTGGTCATTAATGATTGCACTGAATATGACGTTGAAGGAGCAGAAAACGAGCCGAACTTCGACGTGCAGGATTCCAAACCGGAAAATCTCAGTTCGATCAGTTTAGGACTGGAGAGAACTCGAGAGAGGCTTCCTATTCGACATTCAACTTATCCGATCAAAGGAGAAGTCGTTACAAACTTAGATTTTGTGAGGAAAAGAAAGCCGACCAGTGATTTAAACACCATGACTGATCAAAAAATCTATACTTGCGAGTTTCTTCAATGTCCTTACAGTGAGTCTCGACTCCGCTTTCATGACAGGACTTCTAGGGACAATCATCAAATGTCTTGCCCATATCGGACTTCTTCGGACTTTGGGAGTTCAAATTTCCAATTCAACGAAGTTAAGCCAGTCATCTTCCAGCCATCTTTCGTCCAGTCCAAGCCGCCTCCTCCAACTTTCGACTTATCCAGGCTTGGAGTTCCAGAAGAGGGTCAGAAGCTGATAAGTGAGCTCATGTCAGTCTACGATACTAATGTTCAAGGCTGCAAGAACTCAAATACAGGTCCAAATGCAATGACCGATAATCAAGCTGTTTCTCAGCCGAAGATTCATCATCAGCCAAACGAATTCTTCGGAAATCAAGGTGGTGTTATTATGGAAGGCAACTTCTACCCAGAAGCCAATATTTCGATTAATCATCAGATGGTATGTCGGGAGGGAGGAGGTCAATTCGATCGATTCAAGCCGTTAAACTCTCACTTCGAGACCAACAATGGCAGCAATAACTTCCAGTTGATGTTTGGATCACCATTCGAATTATCATCGTTCAACTACAAAGAAGATGTAGGGGGAGTGGCGATCGATCCGGCCTCGAAGCACCAAGATATTCCAATCTGGTACCAGTAA 1845 46.56 MMMMFEEMGFCGDLDFLSAPPGEGDMAGPQTEPETTVDDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGKNEGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGIPPPWWPTGNEDWWPQLGLQKDQGGPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPGCCPPLSSNGGSGSLVINDCTEYDVEGAENEPNFDVQDSKPENLSSISLGLERTRERLPIRHSTYPIKGEVVTNLDFVRKRKPTSDLNTMTDQKIYTCEFLQCPYSESRLRFHDRTSRDNHQMSCPYRTSSDFGSSNFQFNEVKPVIFQPSFVQSKPPPPTFDLSRLGVPEEGQKLISELMSVYDTNVQGCKNSNTGPNAMTDNQAVSQPKIHHQPNEFFGNQGGVIMEGNFYPEANISINHQMVCREGGGQFDRFKPLNSHFETNNGSNNFQLMFGSPFELSSFNYKEDVGGVAIDPASKHQDIPIWYQ 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9506944 9508788 - Bda025939.1 Bda07g00800 9690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00800 614 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Bda07g00800 614 MobiDBLite consensus disorder prediction 20 43 - -
Bda07g00800 614 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 613 - -
Bda07g00800 614 Coils Coil 48 68 - -
Bda07g00800 614 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 613 IPR006957 GO:0005634
Bda07g00800 614 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Bda07g00800 614 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Bda07g00800 614 MobiDBLite consensus disorder prediction 65 92 - -
Bda07g00800 614 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00800 K14514 EIN3; ethylene-insensitive protein 3 - qsu:111991923 984.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00734 Bda-Chr7:8683235 Bda07g00800 Bda-Chr7:9506944 3.43E-129 transposed
Bda15g00419 Bda-Chr15:7057837 Bda07g00800 Bda-Chr7:9506944 0 transposed
Bda07g00800 Bda-Chr7:9506944 Bda09g00361 Bda-Chr9:4619914 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00800 . 2 613 EIL Transcription Factor Family AT2G27050 60.6 4.0e-193 671.4
Bda09g00361 . 1 607 EIL Transcription Factor Family AT2G27050 59.3 2.5e-187 652.1
Bda15g00419 . 45 479 EIL Transcription Factor Family AT2G27050 59.4 3.3e-139 492.3
Bda07g00734 . 46 382 EIL Transcription Factor Family AT2G27050 54.7 5.0e-95 345.5
Bda07g00734 . 46 574 EIL Transcription Factor Family AT1G73730 53.5 1.7e-140 496.5
Bda07g00800 . 40 333 EIL Transcription Factor Family AT1G73730 62.9 5.1e-105 378.6
Bda09g00361 . 37 300 EIL Transcription Factor Family AT1G73730 67.3 8.4e-100 361.3
Bda15g00419 . 45 289 EIL Transcription Factor Family AT1G73730 66.3 7.6e-93 338.2
Bda07g00800 . 3 613 EIL Transcription Factor Family AT3G20770 61.6 3.7e-205 711.4
Bda09g00361 . 2 607 EIL Transcription Factor Family AT3G20770 60.1 3.1e-199 691.8
Bda15g00419 . 45 467 EIL Transcription Factor Family AT3G20770 61.8 2.8e-144 509.2
Bda07g00734 . 46 327 EIL Transcription Factor Family AT3G20770 61.9 6.0e-94 342.0
Bda07g00734 . 83 288 EIL Transcription Factor Family AT5G65100 61.6 1.8e-70 263.8
Bda07g00800 . 32 298 EIL Transcription Factor Family AT5G10120 57.9 1.9e-84 310.1
Bda09g00361 . 42 297 EIL Transcription Factor Family AT5G10120 57.5 1.4e-82 303.9
Bda07g00734 . 46 290 EIL Transcription Factor Family AT5G10120 54.0 4.1e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16132 PF04873 EIN3 1.70E-130 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00800 Bda_Chr07 FPKM 4.092885 4.413478 5.027087 4.786123 6.574623 7.146505 5.804576 6.680851 7.024827