Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00816 ATGGAGAATGGTTCAGTGGTACTGGCTGATAGTCCACCTTCAACCCCTCTCAGAAAGATTATTATGGTCTCCGCCATTGCTGCTGGTGTTCAGTTTGGGTGGGCTCTCCAGCTCTCGCTGTTAACTCCATACGTTCAGCAATTAGGAGTTCCCCACATTTGGACATCATTCATCTGGCTCTGCGGTCCAATTTCTGGTTTATTAGTTCAGCCCATCGTTGGCTACTACAGTGATCGGTGCACGTCGCGGATAGGTCGTCGCCGCCCGTTCATTATTGGTGGTGCAGCCTTCGTCGCCCTCTCTGTTTTCCTTATTGGCTTTGCTGCCGACATCGGTCATGCTCTTGGCGACGATCTATCCAAGTCCATGAAGCCGCGCGCCGTCGCCATTTTCGTTGTTGGTTTCTGGATCCTCGACGTTGCTAACAATATGTTGCAAGGACCGTGTAGAGCTTTTCTGGCTGATCTTTCAGGTAACGACCACAGGAAAATGAGCCTCTCTAATGGCTTCTTCGCTTTCTTCATGGCCGTCGGAAACTTTTTGGGTTACGGTGCGGGTTCATATGGCGGTCTTCACAAGTTCCTCCCTTTCACCGTGACAAAAGCCTGCGACGTTAACTGTGCGAATCTAAAAACGTGCTTCATCATCGAAATCCTCCTCCTCGTCTCCGTGACTGTGTTCGCTGTTTCAACGGTGAGCGAGATTCCGTTCGTTAAGAAAAAGGACAACGATGAATCAGAACTGTTCTTCAACCAATTGTGGACGGCGTTCAAGCAGCTTTCTAGACCCATGTGGATTCTCTTCCTCGTGACTGCTTTCAACTGGATCGCTTGGTTCTCATTCCTATTGTATGACACGGACTGGATGGGTTTGGACGTGTACGGAGGAAAGCCGACGGGGACGGGGCAAGAAGTGAGGATATATGATATGGGGGTGCGAGCTGGGGCTCTAGGTCTGGTGATTAACTCCATTGTTTTGGCTTTTGCATCCCTCGCCGTCGAGCCCATGAGTCGGGCTTTGAAGGGTGCAAAGAACTGGTGGGGAATTGTTAACTTAATCCTAGCTATCTCCATGTGTATGACTGTGTTTGTGACGAAGGCTGCCCAGCAATGGAGGTCTGCCAATGGCCTCCACCCTCCTCCCTCTCATATTAAAGCCGGAGCATTCACCATCTTTGCTATTCTAGGCATTCCTCTTTCGGTTAGTTTCTCCACATCTTCTACCATAGTAAGATCAAACTATAACATCATCTTTGAATTATTTAATTTCTGCGTGGCTGAACAGGTGAATTACAGTGTTCCATGGGCTCTGGCTTCCATCTACTCCGAGAGTTGCGGCGCTGGCCAAGGTTAA 1353 49.37 MENGSVVLADSPPSTPLRKIIMVSAIAAGVQFGWALQLSLLTPYVQQLGVPHIWTSFIWLCGPISGLLVQPIVGYYSDRCTSRIGRRRPFIIGGAAFVALSVFLIGFAADIGHALGDDLSKSMKPRAVAIFVVGFWILDVANNMLQGPCRAFLADLSGNDHRKMSLSNGFFAFFMAVGNFLGYGAGSYGGLHKFLPFTVTKACDVNCANLKTCFIIEILLLVSVTVFAVSTVSEIPFVKKKDNDESELFFNQLWTAFKQLSRPMWILFLVTAFNWIAWFSFLLYDTDWMGLDVYGGKPTGTGQEVRIYDMGVRAGALGLVINSIVLAFASLAVEPMSRALKGAKNWWGIVNLILAISMCMTVFVTKAAQQWRSANGLHPPPSHIKAGAFTIFAILGIPLSVSFSTSSTIVRSNYNIIFELFNFCVAEQVNYSVPWALASIYSESCGAGQG 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9639230 9640582 - Bda025952.1 Bda07g00816 9706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00816 450 TIGRFAM GPH_sucrose: sucrose/H+ symporter 16 410 IPR005989 GO:0005887|GO:0008515|GO:0015770
Bda07g00816 450 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 13 406 - -
Bda07g00816 450 Pfam MFS/sugar transport protein 32 277 - -
Bda07g00816 450 Gene3D MFS general substrate transporter like domains 17 235 IPR036259 -
Bda07g00816 450 CDD MFS_SLC45_SUC 20 450 - -
Bda07g00816 450 PANTHER SUGAR TRANSPORTER 13 406 - -
Bda07g00816 450 SUPERFAMILY MFS general substrate transporter 18 411 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00816 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 581.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00635 Bda-Chr4:54979385 Bda07g00816 Bda-Chr7:9639230 0 dispersed
Bda07g00816 Bda-Chr7:9639230 Bda13g01438 Bda-Chr13:37127035 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00816 Bda_Chr07 FPKM 3.733514 3.829739 7.822074 8.55477 16.792601 16.012697 16.317417 13.539899 12.165653