Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00873 ATGAAGGAGAGTGGGAGGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGTGTGTTTGCTCCTTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTCTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCTGGGGCCATCTCTTCTCTGCAACAACAAATCGATCTACTTCAAACCCAGCTCGCGTTAGCTCAGGCCGAGGTAGTGCACCTTCGGATGCGCCAGGGTGCGCCGTTTTCGAGCCACAGTGCGAGCCCAACGAGCCCGAGTCATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATTTTTGAAATGGACTTGATTGTGGATCATGCCAATGCCATGAGTGATTCTATTTGG 510 52.75 MKESGRKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALAQAEVVHLRMRQGAPFSSHSASPTSPSHSGSPSSRLLGSHAKPIFEMDLIVDHANAMSDSIW 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 10197152 10198297 - Bda033872 Bda07g00873 9763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00873 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 163 - -
Bda07g00873 170 Coils Coil 92 119 - -
Bda07g00873 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 163 - -
Bda07g00873 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Bda07g00873 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Bda07g00873 170 MobiDBLite consensus disorder prediction 122 145 - -
Bda07g00873 170 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00006 Bda-Chr1:294688 Bda07g00873 Bda-Chr7:10197152 4.29E-23 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda14g00236 Bda-Chr14:1600223 1.75E-61 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda15g00282 Bda-Chr15:5610058 4.30E-62 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16135 PF03195 LOB 8.40E-43 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00873 - - tcc:18596365 245.743