Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00873 ATGAAGGAGAGTGGGAGGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGTGTGTTTGCTCCTTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTCTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCTGGGGCCATCTCTTCTCTGCAACAACAAATCGATCTACTTCAAACCCAGCTCGCGTTAGCTCAGGCCGAGGTAGTGCACCTTCGGATGCGCCAGGGTGCGCCGTTTTCGAGCCACAGTGCGAGCCCAACGAGCCCGAGTCATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATTTTTGAAATGGACTTGATTGTGGATCATGCCAATGCCATGAGTGATTCTATTTGG 510 52.75 MKESGRKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALAQAEVVHLRMRQGAPFSSHSASPTSPSHSGSPSSRLLGSHAKPIFEMDLIVDHANAMSDSIW 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10197152 10198297 - Bda033872 Bda07g00873 9763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00873 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 163 - -
Bda07g00873 170 Coils Coil 92 119 - -
Bda07g00873 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 163 - -
Bda07g00873 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Bda07g00873 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Bda07g00873 170 MobiDBLite consensus disorder prediction 122 145 - -
Bda07g00873 170 MobiDBLite consensus disorder prediction 123 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00873 - - - tcc:18596365 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00006 Bda-Chr1:294688 Bda07g00873 Bda-Chr7:10197152 4.29E-23 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda14g00236 Bda-Chr14:1600223 1.75E-61 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda15g00282 Bda-Chr15:5610058 4.30E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01103 . 3 215 AS2 family AT1G65620 69.7 9.1e-81 296.6
Bda13g01832 . 3 215 AS2 family AT1G65620 67.4 2.4e-73 271.9
Bda07g01123 . 19 208 AS2 family AT1G65620 60.9 3.7e-58 221.5
Bda11g01424 . 2 110 AS2 family AT1G65620 79.8 2.5e-46 182.2
Bda15g00546 CCT,ECH 35 145 AS2 family AT1G65620 74.8 3.6e-45 178.3
Bda11g01663 CCT,ECH 3 118 AS2 family AT1G65620 69.8 8.9e-44 173.7
Bda14g01228 . 2 110 AS2 family AT1G65620 76.1 7.6e-43 170.6
Bda14g01169 . 1 114 AS2 family AT1G65620 69.3 2.9e-42 168.7
Bda14g01228 . 1 136 AS2 family AT5G66870 77.2 3.6e-55 212.2
Bda11g01424 . 1 137 AS2 family AT5G66870 75.9 6.1e-55 211.5
Bda01g01103 . 3 111 AS2 family AT5G66870 78.0 7.4e-45 177.9
Bda13g01832 . 3 111 AS2 family AT5G66870 78.0 9.7e-45 177.6
Bda07g01123 . 20 128 AS2 family AT5G66870 72.5 7.7e-42 167.9
Bda15g00546 CCT,ECH 33 145 AS2 family AT5G66870 69.0 7.2e-40 161.4
Bda14g01169 . 1 114 AS2 family AT5G66870 65.8 1.4e-38 157.1
Bda11g01663 CCT,ECH 5 113 AS2 family AT5G66870 66.1 3.0e-38 156.0
Bda11g01424 . 4 165 AS2 family AT2G23660 59.3 6.7e-46 181.4
Bda01g01103 . 5 111 AS2 family AT2G23660 68.2 1.6e-39 160.2
Bda13g01832 . 5 111 AS2 family AT2G23660 68.2 2.1e-39 159.8
Bda15g00546 CCT,ECH 40 145 AS2 family AT2G23660 65.1 6.1e-39 158.3
Bda11g01663 CCT,ECH 8 113 AS2 family AT2G23660 64.2 1.1e-37 154.1
Bda14g01169 . 8 114 AS2 family AT2G23660 59.8 9.7e-37 151.0
Bda14g01169 . 5 115 AS2 family AT3G27650 82.9 1.6e-51 199.1
Bda15g00546 CCT,ECH 17 146 AS2 family AT3G27650 69.2 4.8e-48 187.6
Bda11g01663 CCT,ECH 4 117 AS2 family AT3G27650 74.8 4.5e-46 181.0
Bda01g01103 . 1 111 AS2 family AT3G27650 67.6 8.7e-42 166.8
Bda13g01832 . 1 111 AS2 family AT3G27650 67.6 1.1e-41 166.4
Bda07g01123 . 18 128 AS2 family AT3G27650 64.9 1.1e-39 159.8
Bda11g01424 . 4 112 AS2 family AT3G27650 66.1 1.2e-38 156.4
Bda15g00546 CCT,ECH 35 160 AS2 family AT5G63090 87.3 2.0e-58 222.2
Bda11g01663 CCT,ECH 3 121 AS2 family AT5G63090 82.1 8.1e-55 210.3
Bda14g01169 . 1 138 AS2 family AT5G63090 76.1 5.8e-53 204.1
Bda01g01103 . 1 111 AS2 family AT5G63090 74.6 2.6e-45 178.7
Bda13g01832 . 1 111 AS2 family AT5G63090 73.7 3.8e-44 174.9
Bda07g01123 . 19 128 AS2 family AT5G63090 70.0 4.6e-42 167.9
Bda11g01424 . 2 110 AS2 family AT5G63090 68.8 2.1e-39 159.1
Bda14g00236 . 4 106 AS2 family AT5G63090 69.9 8.1e-39 157.1
Bda15g00282 . 4 106 AS2 family AT5G63090 69.9 1.1e-38 156.8
Bda07g00873 . 12 122 AS2 family AT5G63090 64.0 2.0e-37 152.5
Bda14g00236 . 3 115 AS2 family AT2G30130 90.3 1.7e-55 212.6
Bda15g00282 . 3 115 AS2 family AT2G30130 90.3 2.2e-55 212.2
Bda07g00873 . 11 127 AS2 family AT2G30130 70.9 1.7e-44 176.0
Bda15g00546 CCT,ECH 40 143 AS2 family AT2G30130 68.3 1.2e-37 153.3
Bda01g01103 . 1 108 AS2 family AT2G30130 64.8 2.1e-37 152.5
Bda13g01832 . 1 108 AS2 family AT2G30130 64.8 2.7e-37 152.1
Bda07g00873 . 1 170 AS2 family AT1G31320 73.1 1.0e-64 243.0
Bda14g00236 . 2 113 AS2 family AT1G31320 70.5 1.0e-43 173.3
Bda15g00282 . 2 113 AS2 family AT1G31320 69.6 1.3e-43 172.9
Bda01g01103 . 7 121 AS2 family AT1G31320 62.7 3.1e-37 151.8
Bda13g01832 . 7 121 AS2 family AT1G31320 62.7 4.1e-37 151.4
Bda14g00187 . 16 129 AS2 family AT1G31320 61.4 7.0e-37 150.6
Bda14g00338 . 49 177 AS2 family AT2G28500 72.1 2.2e-46 182.6
Bda09g00178 BCT 35 204 AS2 family AT2G28500 54.3 1.6e-44 176.4
Bda07g00619 BCT 39 202 AS2 family AT2G28500 53.3 1.4e-40 163.3
Bda14g00236 . 5 119 AS2 family AT2G28500 64.3 5.0e-38 154.8
Bda15g00282 . 5 119 AS2 family AT2G28500 61.7 9.4e-37 150.6
Bda09g00178 BCT 12 204 AS2 family AT1G07900 58.7 3.7e-47 184.9
Bda14g00338 . 23 220 AS2 family AT1G07900 50.7 5.0e-44 174.5
Bda07g00619 BCT 33 202 AS2 family AT1G07900 62.6 4.7e-42 167.9
Bda07g00873 . 1 170 AS2 family AT1G16530 50.6 4.1e-42 167.9
Bda14g00236 . 5 128 AS2 family AT1G16530 58.0 1.8e-37 152.5
Bda15g00282 . 5 132 AS2 family AT1G16530 56.1 2.3e-37 152.1
Bda14g00187 . 3 135 AS2 family AT2G30340 72.6 1.6e-51 199.9
Bda14g00213 . 4 152 AS2 family AT2G30340 63.2 5.1e-50 194.9
Bda14g00213 . 26 217 AS2 family AT2G40470 66.0 4.0e-60 228.0
Bda14g00187 . 7 148 AS2 family AT2G40470 78.8 1.1e-57 219.9
Bda14g00236 . 5 123 AS2 family AT2G40470 65.3 2.5e-38 155.6
Bda07g00873 . 12 120 AS2 family AT2G40470 65.1 4.3e-38 154.8
Bda15g00282 . 5 123 AS2 family AT2G40470 64.5 2.8e-37 152.1
Bda10g00531 . 1 112 AS2 family AT2G42440 80.4 4.3e-48 188.3
Bda08g00229 . 22 122 AS2 family AT2G42440 70.3 5.3e-38 154.8
Bda10g00531 . 3 124 AS2 family AT3G58190 81.1 5.2e-53 204.5
Bda08g00229 . 22 124 AS2 family AT3G58190 74.8 2.7e-41 165.6
Bda05g00845 . 6 98 AS2 family AT3G58190 77.4 9.5e-39 157.1
Bda10g00531 . 2 109 AS2 family AT2G42430 73.1 4.6e-42 168.3
Bda05g00845 . 7 99 AS2 family AT2G42430 86.0 1.0e-41 167.2
Bda08g00229 . 22 124 AS2 family AT2G42430 73.8 1.5e-40 163.3
Bda08g00229 . 7 216 AS2 family AT4G00220 59.2 3.2e-53 205.3
Bda03g00898 . 29 113 AS2 family AT4G00220 85.9 2.9e-38 155.6
Bda08g00229 . 22 216 AS2 family AT2G45420 67.1 6.0e-64 241.1
Bda10g00531 . 7 109 AS2 family AT2G45420 72.8 9.3e-41 164.1
Bda03g00898 . 29 113 AS2 family AT2G45420 87.1 1.6e-40 163.3
Bda05g00845 . 11 109 AS2 family AT2G45420 75.5 2.5e-38 156.0
Bda08g00229 . 22 123 AS2 family AT3G03760 79.4 2.8e-40 162.5
Bda10g00531 . 6 111 AS2 family AT3G03760 69.8 1.7e-37 153.3
Bda08g00229 . 22 130 AS2 family AT4G00210 76.4 1.2e-44 176.8
Bda10g00531 . 5 107 AS2 family AT4G00210 67.0 5.2e-37 151.4
Bda08g00229 . 22 126 AS2 family AT2G45410 74.3 2.7e-45 178.7
Bda03g00898 . 29 113 AS2 family AT2G45410 77.6 7.8e-37 150.6
Bda10g00531 . 1 107 AS2 family AT5G06080 68.2 8.5e-38 153.7
Bda08g00229 . 23 123 AS2 family AT5G06080 69.3 9.4e-37 150.2
Bda06g00557 BCT 1 146 AS2 family AT3G47870 51.7 1.1e-38 157.5
Bda01g00006 . 16 148 AS2 family AT1G06280 59.7 1.3e-37 153.3
Bda01g01171 . 1 157 AS2 family AT1G68510 67.9 2.6e-58 222.2
Bda13g01768 . 1 219 AS2 family AT1G68510 52.0 8.5e-54 207.2
Bda11g01472 CCT,ECH 1 104 AS2 family AT1G68510 64.4 7.0e-40 161.0
Bda01g01591 CCT,ECH 77 207 AS2 family AT1G68510 57.3 6.6e-38 154.5
Bda08g01358 . 1 104 AS2 family AT1G68510 64.4 8.6e-38 154.1
Bda10g00002 . 1 126 AS2 family AT1G68510 54.0 1.2e-36 150.2
Bda01g01171 . 1 138 AS2 family AT1G67100 80.9 4.1e-64 241.5
Bda13g01768 . 1 188 AS2 family AT1G67100 62.6 1.4e-59 226.5
Bda11g01472 CCT,ECH 1 104 AS2 family AT1G67100 70.2 8.0e-44 174.1
Bda10g00002 . 1 130 AS2 family AT1G67100 56.9 5.4e-40 161.4
Bda08g01358 . 1 104 AS2 family AT1G67100 65.4 1.6e-39 159.8
Bda01g01591 CCT,ECH 77 187 AS2 family AT1G67100 61.3 2.9e-38 155.6
Bda01g01171 . 1 291 AS2 family AT3G02550 57.9 1.5e-75 279.6
Bda13g01768 . 1 318 AS2 family AT3G02550 52.8 1.4e-73 273.1
Bda11g01472 CCT,ECH 1 122 AS2 family AT3G02550 62.3 1.4e-41 166.8
Bda08g01358 . 1 115 AS2 family AT3G02550 63.5 1.0e-39 160.6
Bda10g00002 . 1 130 AS2 family AT3G02550 58.5 5.1e-39 158.3
Bda01g01591 CCT,ECH 77 181 AS2 family AT3G02550 64.8 4.8e-37 151.8
Bda10g00002 . 1 237 AS2 family AT5G67420 56.1 5.2e-65 244.6
Bda11g01472 CCT,ECH 1 229 AS2 family AT5G67420 56.3 2.6e-64 242.3
Bda08g01358 . 1 138 AS2 family AT5G67420 61.8 1.3e-47 186.8
Bda01g01171 . 3 122 AS2 family AT5G67420 64.2 6.6e-44 174.5
Bda01g01591 CCT,ECH 78 215 AS2 family AT5G67420 58.3 5.6e-43 171.4
Bda01g00585 CCT,ECH 1 115 AS2 family AT5G67420 60.0 8.9e-41 164.1
Bda13g01768 . 3 142 AS2 family AT5G67420 53.6 9.8e-40 160.6
Bda11g01472 CCT,ECH 1 228 AS2 family AT3G49940 60.4 3.1e-70 261.9
Bda10g00002 . 1 236 AS2 family AT3G49940 56.5 1.8e-62 236.1
Bda08g01358 . 1 138 AS2 family AT3G49940 64.3 4.3e-48 188.3
Bda01g01591 CCT,ECH 78 218 AS2 family AT3G49940 58.2 1.2e-42 170.2
Bda01g01171 . 3 112 AS2 family AT3G49940 67.3 3.6e-42 168.7
Bda01g00585 CCT,ECH 1 115 AS2 family AT3G49940 61.7 1.3e-39 160.2
Bda13g01768 . 3 142 AS2 family AT3G49940 53.6 3.1e-38 155.6
Bda11g01472 CCT,ECH 1 229 AS2 family AT4G37540 55.0 9.4e-64 240.4
Bda10g00002 . 1 237 AS2 family AT4G37540 54.0 7.4e-61 230.7
Bda08g01358 . 1 110 AS2 family AT4G37540 77.3 5.2e-46 181.4
Bda01g00585 CCT,ECH 1 114 AS2 family AT4G37540 64.0 2.2e-41 166.0
Bda01g01171 . 3 113 AS2 family AT4G37540 64.9 8.5e-41 164.1
Bda01g01591 CCT,ECH 78 190 AS2 family AT4G37540 66.4 1.2e-39 160.2
Bda13g01768 . 3 143 AS2 family AT4G37540 51.8 7.5e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16135 PF03195 LOB 8.40E-43 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00873 Bda_Chr07 FPKM 31.277374 33.027634 12.547753 13.298696 11.654516 10.397581 11.190216 28.815054 29.545319