Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda07g00873 | ATGAAGGAGAGTGGGAGGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGTGTGTTTGCTCCTTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTCTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCTGGGGCCATCTCTTCTCTGCAACAACAAATCGATCTACTTCAAACCCAGCTCGCGTTAGCTCAGGCCGAGGTAGTGCACCTTCGGATGCGCCAGGGTGCGCCGTTTTCGAGCCACAGTGCGAGCCCAACGAGCCCGAGTCATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATTTTTGAAATGGACTTGATTGTGGATCATGCCAATGCCATGAGTGATTCTATTTGG | 510 | 52.75 | MKESGRKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALAQAEVVHLRMRQGAPFSSHSASPTSPSHSGSPSSRLLGSHAKPIFEMDLIVDHANAMSDSIW | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 10197152 | 10198297 | - | Bda033872 | Bda07g00873 | 9763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda07g00873 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 163 | - | - | |
| Bda07g00873 | 170 | Coils | Coil | 92 | 119 | - | - | |
| Bda07g00873 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 163 | - | - | |
| Bda07g00873 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
| Bda07g00873 | 170 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
| Bda07g00873 | 170 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
| Bda07g00873 | 170 | MobiDBLite | consensus disorder prediction | 123 | 144 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00006 | Bda-Chr1:294688 | Bda07g00873 | Bda-Chr7:10197152 | 4.29E-23 | dispersed | |
| Bda07g00873 | Bda-Chr7:10197152 | Bda14g00236 | Bda-Chr14:1600223 | 1.75E-61 | dispersed | |
| Bda07g00873 | Bda-Chr7:10197152 | Bda15g00282 | Bda-Chr15:5610058 | 4.30E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16135 | PF03195 | LOB | 8.40E-43 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda07g00873 | - | - | tcc:18596365 | 245.743 |