Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00874 ATGTCCCGGATATGTGTGAAAAATTTACCCAAGTACCTGTCTGACGATCGCTTTCGAGAATTCTTCTCCCAGAAAGGGGAAATTACAGATGCAAAGCTCATGCGGACCAAAGATGGTAAGAGCAGACAGTTTGGTTTTATTGGTTACCGCACTGAATTAGAAGCTGAAGAGGCGATTAAGTTCTTTGACAAAAGTTATCTTGATACTTATAGACTAACTTGTGAGGTTGCTCATAAAGTTGGGGATCCAAATATTCCTCGTCCTTGGAGTAGGTATTCTGTAAAGAATGAAGACAAGAAAACTGAAAAAGAGAAGAAACTCGGTGGTACTAGAGGAGAGGGAAATAATCTTAAAAAGGACATTAAGGAAAATGACCCTAAGCTTGAAGAGTTTTTGCAGCTCACACAGCCTCGAGTTAAGTCAAAATTATGGGCAAATGACACAGTGGCTCCAACATTCGATCATAATGAACAAACTAGTGATAAACAACTCCAACCAAAGAAGAAAATCAAAGAGATACTGGTTTCTGATGACATGGAGCTAAACAAAACCAATAAGGTGGTACATGAGTCCTCTAAGTCTCATCTGAAAGATGAATCACAAAAGCTTGTTTATGATAATGATATTACAGATATGGACTATTTTAAGAGCAGAGTAAAAAAAGAATGGTCAGATTCAGAAAGTAGTGATGGTGATAGGGATGATGACAATGTTGAGGGTGGTGATGAATCTCAGAAGGAAGATAATAAAAGACAAGTTATCGAGAAAGAAGATCAAAATATACAACTTGAGGCTGGCAGAAAAATCACCACTGAAAATGAAGCTGAAAAGGAAGATTCTGATAGAGATGCGAGAAACACAAAGGAATTGTCGTCAAGTTTGATACATGAAAAAGAACTAATAGATACTGATCGACTATTTGTTCGGAACCTGCCATATACAGCAACTGAGGAGGAGCTAGAAGAGCACTTCTCCAAATTTGGTAATATCTCGCAGGTCCATATTGTTCTCAATAAAGATACCAAACAGTCCAAAGGAACTGCTTACATTCGTTTCTCACTTCCAGAGTCTGCTGCAAGGGCATTAGAAGAATTGGATAGTTCAATTTTTCAAGGCAGATTATTGCATATTATGCCTGCATATCAGAAAAGCTCTTCTGGGAAACAAGAGAATGATAATGGCCAAGCTTCAAAATCTTTTAAAGAGAGGAGGGTGGAGGAGCGTAAGGCATCAGAAGCAAGTGGAGATACAAGAGCTTGGAATAGTTTATTCATGCGTTCTGATACTGTTGTTGAGTATATTGCTAGAAAACATGGTGTAAGTAAGACTGATTTTCTGGACCGAAATGCTGATGATCTTGCTGTTCGGATTGCTTTGGGAGAAACTCAAGTAGTTGCTGACACTAAAAAATCTCTTGAAAATGCTGGAGTTGATATAGCAACATTAGAACAATTTGCGAATGGAAAATCTGATGGTGCAAAAAGGAGCAAACATGTTCTATTGGTGAAGAACTTACCATATAGCTCTTCAAAAGATGAACTTCTTCATATGTTTGGAAAGTACGGTAGCTTGGAAAAAATCATTCTTCCTGCAACAAAAATCTTGGCGCTGGTTGTGTTTCTAGAATCATCTGAAGCTCGTGCTGCCTTTAAGGGTTTGGCATATAAGAGATTTAAGGATGCTCCGTTGTATTTGGAGTGGGCTCCTGCTAATATTCTTAGTGGAAGTTCAACATCTGACAGCAACCATAAAGAAAATGGAGTTATTGTCGAACAAGATGCAAAGAGAATGATGTTAGAGCACAAAATCCAGGGAATATCTGATGTGGAGGTTGATCCTGATAGAGTTGAGTCTCGATCTCTTTTTGTCAAAAACCTAAATTTTAAGACCACTGATGAAAGCTTGAAGATGCATTTCAGTGAACTCATGAAGGAAGGAAGGATATTAAGTGTCAAGATAAAGAAGTCTAAAAAAGGGAAGAATCTTTCTGAGGGTTATGGCTTTATACAGTTTGATTCTGTTGAGACAGCAGCAAATGTTTGTAGTAATTTGCAGGGAACAATTTTGGATGGACATGCTCTTAGTTTGCAAATTTGTCATGCCAAACAGGAGCAAGTACAAAAAAAAGTGGAGAAGGGTATGAGCTTGACAAAATTACTTGTTAGAAATTTGGCTTTTGAAGCTACAGAGAAAGACCTGAGACAGCTATTTAATCCATTTGGCCAGGTAAAGAGCTTAAGATTGCCAAAGAAGTTCGGAAATCATAGAGGTTTCGCATTTGTGGAATATGTCACAAAGCAAGATGCACAAAATGCACTTCAAGCTCTTTTGCATACCCATCTCTATGGCCGGCATTTGGTGCTAGAGAGAGCCAAAGAAGGGGAGAGCTTAGATGAATTACGGGCTCGAACAGCCGCGCAGTTTAGCGATCCAACCAACACATCCAAGAAGAGGAATCACGCAACAATTTCGGATGACGTTTGA 2484 38.73 MSRICVKNLPKYLSDDRFREFFSQKGEITDAKLMRTKDGKSRQFGFIGYRTELEAEEAIKFFDKSYLDTYRLTCEVAHKVGDPNIPRPWSRYSVKNEDKKTEKEKKLGGTRGEGNNLKKDIKENDPKLEEFLQLTQPRVKSKLWANDTVAPTFDHNEQTSDKQLQPKKKIKEILVSDDMELNKTNKVVHESSKSHLKDESQKLVYDNDITDMDYFKSRVKKEWSDSESSDGDRDDDNVEGGDESQKEDNKRQVIEKEDQNIQLEAGRKITTENEAEKEDSDRDARNTKELSSSLIHEKELIDTDRLFVRNLPYTATEEELEEHFSKFGNISQVHIVLNKDTKQSKGTAYIRFSLPESAARALEELDSSIFQGRLLHIMPAYQKSSSGKQENDNGQASKSFKERRVEERKASEASGDTRAWNSLFMRSDTVVEYIARKHGVSKTDFLDRNADDLAVRIALGETQVVADTKKSLENAGVDIATLEQFANGKSDGAKRSKHVLLVKNLPYSSSKDELLHMFGKYGSLEKIILPATKILALVVFLESSEARAAFKGLAYKRFKDAPLYLEWAPANILSGSSTSDSNHKENGVIVEQDAKRMMLEHKIQGISDVEVDPDRVESRSLFVKNLNFKTTDESLKMHFSELMKEGRILSVKIKKSKKGKNLSEGYGFIQFDSVETAANVCSNLQGTILDGHALSLQICHAKQEQVQKKVEKGMSLTKLLVRNLAFEATEKDLRQLFNPFGQVKSLRLPKKFGNHRGFAFVEYVTKQDAQNALQALLHTHLYGRHLVLERAKEGESLDELRARTAAQFSDPTNTSKKRNHATISDDV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10204933 10212033 + Bda026011.1 Bda07g00874 9764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00874 827 MobiDBLite consensus disorder prediction 382 413 - -
Bda07g00874 827 Gene3D - 2 100 IPR012677 -
Bda07g00874 827 SMART rrm1_1 3 75 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 499 566 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 620 697 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 718 789 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 305 378 IPR000504 GO:0003723
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Bda07g00874 827 MobiDBLite consensus disorder prediction 395 413 - -
Bda07g00874 827 MobiDBLite consensus disorder prediction 220 291 - -
Bda07g00874 827 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 813 - -
Bda07g00874 827 CDD RRM3_RBM19_RRM2_MRD1 305 378 - -
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 562 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 621 694 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 71 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 719 786 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 376 IPR000504 GO:0003723
Bda07g00874 827 MobiDBLite consensus disorder prediction 94 120 - -
Bda07g00874 827 Gene3D - 489 592 IPR012677 -
Bda07g00874 827 Gene3D - 712 820 IPR012677 -
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 305 569 IPR035979 GO:0003676
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 717 793 IPR000504 GO:0003723
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm2_1 305 378 IPR003954 GO:0003676
Bda07g00874 827 SMART rrm2_1 620 697 IPR003954 GO:0003676
Bda07g00874 827 SMART rrm2_1 718 789 IPR003954 GO:0003676
Bda07g00874 827 Gene3D - 615 711 IPR012677 -
Bda07g00874 827 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 813 - -
Bda07g00874 827 CDD RRM1_MRD1 2 77 - -
Bda07g00874 827 MobiDBLite consensus disorder prediction 808 827 - -
Bda07g00874 827 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Bda07g00874 827 Gene3D - 216 394 IPR012677 -
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 619 701 IPR000504 GO:0003723
Bda07g00874 827 CDD RRM6_RBM19_RRM5_MRD1 717 791 - -
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 617 793 IPR035979 GO:0003676
Bda07g00874 827 MobiDBLite consensus disorder prediction 239 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00874 Bda-Chr7:10204933 Bda01g01608 Bda-Chr1:51929890 1.97E-09 dispersed
Bda08g00947 Bda-Chr8:17789171 Bda07g00874 Bda-Chr7:10204933 5.44E-07 dispersed
Bda10g00078 Bda-Chr10:1677515 Bda07g00874 Bda-Chr7:10204933 2.54E-09 dispersed
Bda07g00874 Bda-Chr7:10204933 Bda14g00509 Bda-Chr14:3707904 1.05E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00874 K14787 - vvi:100247562 1018.07