Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00874 ATGTCCCGGATATGTGTGAAAAATTTACCCAAGTACCTGTCTGACGATCGCTTTCGAGAATTCTTCTCCCAGAAAGGGGAAATTACAGATGCAAAGCTCATGCGGACCAAAGATGGTAAGAGCAGACAGTTTGGTTTTATTGGTTACCGCACTGAATTAGAAGCTGAAGAGGCGATTAAGTTCTTTGACAAAAGTTATCTTGATACTTATAGACTAACTTGTGAGGTTGCTCATAAAGTTGGGGATCCAAATATTCCTCGTCCTTGGAGTAGGTATTCTGTAAAGAATGAAGACAAGAAAACTGAAAAAGAGAAGAAACTCGGTGGTACTAGAGGAGAGGGAAATAATCTTAAAAAGGACATTAAGGAAAATGACCCTAAGCTTGAAGAGTTTTTGCAGCTCACACAGCCTCGAGTTAAGTCAAAATTATGGGCAAATGACACAGTGGCTCCAACATTCGATCATAATGAACAAACTAGTGATAAACAACTCCAACCAAAGAAGAAAATCAAAGAGATACTGGTTTCTGATGACATGGAGCTAAACAAAACCAATAAGGTGGTACATGAGTCCTCTAAGTCTCATCTGAAAGATGAATCACAAAAGCTTGTTTATGATAATGATATTACAGATATGGACTATTTTAAGAGCAGAGTAAAAAAAGAATGGTCAGATTCAGAAAGTAGTGATGGTGATAGGGATGATGACAATGTTGAGGGTGGTGATGAATCTCAGAAGGAAGATAATAAAAGACAAGTTATCGAGAAAGAAGATCAAAATATACAACTTGAGGCTGGCAGAAAAATCACCACTGAAAATGAAGCTGAAAAGGAAGATTCTGATAGAGATGCGAGAAACACAAAGGAATTGTCGTCAAGTTTGATACATGAAAAAGAACTAATAGATACTGATCGACTATTTGTTCGGAACCTGCCATATACAGCAACTGAGGAGGAGCTAGAAGAGCACTTCTCCAAATTTGGTAATATCTCGCAGGTCCATATTGTTCTCAATAAAGATACCAAACAGTCCAAAGGAACTGCTTACATTCGTTTCTCACTTCCAGAGTCTGCTGCAAGGGCATTAGAAGAATTGGATAGTTCAATTTTTCAAGGCAGATTATTGCATATTATGCCTGCATATCAGAAAAGCTCTTCTGGGAAACAAGAGAATGATAATGGCCAAGCTTCAAAATCTTTTAAAGAGAGGAGGGTGGAGGAGCGTAAGGCATCAGAAGCAAGTGGAGATACAAGAGCTTGGAATAGTTTATTCATGCGTTCTGATACTGTTGTTGAGTATATTGCTAGAAAACATGGTGTAAGTAAGACTGATTTTCTGGACCGAAATGCTGATGATCTTGCTGTTCGGATTGCTTTGGGAGAAACTCAAGTAGTTGCTGACACTAAAAAATCTCTTGAAAATGCTGGAGTTGATATAGCAACATTAGAACAATTTGCGAATGGAAAATCTGATGGTGCAAAAAGGAGCAAACATGTTCTATTGGTGAAGAACTTACCATATAGCTCTTCAAAAGATGAACTTCTTCATATGTTTGGAAAGTACGGTAGCTTGGAAAAAATCATTCTTCCTGCAACAAAAATCTTGGCGCTGGTTGTGTTTCTAGAATCATCTGAAGCTCGTGCTGCCTTTAAGGGTTTGGCATATAAGAGATTTAAGGATGCTCCGTTGTATTTGGAGTGGGCTCCTGCTAATATTCTTAGTGGAAGTTCAACATCTGACAGCAACCATAAAGAAAATGGAGTTATTGTCGAACAAGATGCAAAGAGAATGATGTTAGAGCACAAAATCCAGGGAATATCTGATGTGGAGGTTGATCCTGATAGAGTTGAGTCTCGATCTCTTTTTGTCAAAAACCTAAATTTTAAGACCACTGATGAAAGCTTGAAGATGCATTTCAGTGAACTCATGAAGGAAGGAAGGATATTAAGTGTCAAGATAAAGAAGTCTAAAAAAGGGAAGAATCTTTCTGAGGGTTATGGCTTTATACAGTTTGATTCTGTTGAGACAGCAGCAAATGTTTGTAGTAATTTGCAGGGAACAATTTTGGATGGACATGCTCTTAGTTTGCAAATTTGTCATGCCAAACAGGAGCAAGTACAAAAAAAAGTGGAGAAGGGTATGAGCTTGACAAAATTACTTGTTAGAAATTTGGCTTTTGAAGCTACAGAGAAAGACCTGAGACAGCTATTTAATCCATTTGGCCAGGTAAAGAGCTTAAGATTGCCAAAGAAGTTCGGAAATCATAGAGGTTTCGCATTTGTGGAATATGTCACAAAGCAAGATGCACAAAATGCACTTCAAGCTCTTTTGCATACCCATCTCTATGGCCGGCATTTGGTGCTAGAGAGAGCCAAAGAAGGGGAGAGCTTAGATGAATTACGGGCTCGAACAGCCGCGCAGTTTAGCGATCCAACCAACACATCCAAGAAGAGGAATCACGCAACAATTTCGGATGACGTTTGA 2484 38.73 MSRICVKNLPKYLSDDRFREFFSQKGEITDAKLMRTKDGKSRQFGFIGYRTELEAEEAIKFFDKSYLDTYRLTCEVAHKVGDPNIPRPWSRYSVKNEDKKTEKEKKLGGTRGEGNNLKKDIKENDPKLEEFLQLTQPRVKSKLWANDTVAPTFDHNEQTSDKQLQPKKKIKEILVSDDMELNKTNKVVHESSKSHLKDESQKLVYDNDITDMDYFKSRVKKEWSDSESSDGDRDDDNVEGGDESQKEDNKRQVIEKEDQNIQLEAGRKITTENEAEKEDSDRDARNTKELSSSLIHEKELIDTDRLFVRNLPYTATEEELEEHFSKFGNISQVHIVLNKDTKQSKGTAYIRFSLPESAARALEELDSSIFQGRLLHIMPAYQKSSSGKQENDNGQASKSFKERRVEERKASEASGDTRAWNSLFMRSDTVVEYIARKHGVSKTDFLDRNADDLAVRIALGETQVVADTKKSLENAGVDIATLEQFANGKSDGAKRSKHVLLVKNLPYSSSKDELLHMFGKYGSLEKIILPATKILALVVFLESSEARAAFKGLAYKRFKDAPLYLEWAPANILSGSSTSDSNHKENGVIVEQDAKRMMLEHKIQGISDVEVDPDRVESRSLFVKNLNFKTTDESLKMHFSELMKEGRILSVKIKKSKKGKNLSEGYGFIQFDSVETAANVCSNLQGTILDGHALSLQICHAKQEQVQKKVEKGMSLTKLLVRNLAFEATEKDLRQLFNPFGQVKSLRLPKKFGNHRGFAFVEYVTKQDAQNALQALLHTHLYGRHLVLERAKEGESLDELRARTAAQFSDPTNTSKKRNHATISDDV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10204933 10212033 + Bda026011.1 Bda07g00874 9764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00874 827 MobiDBLite consensus disorder prediction 382 413 - -
Bda07g00874 827 Gene3D - 2 100 IPR012677 -
Bda07g00874 827 SMART rrm1_1 3 75 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 499 566 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 620 697 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 718 789 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm1_1 305 378 IPR000504 GO:0003723
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Bda07g00874 827 MobiDBLite consensus disorder prediction 395 413 - -
Bda07g00874 827 MobiDBLite consensus disorder prediction 220 291 - -
Bda07g00874 827 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 813 - -
Bda07g00874 827 CDD RRM3_RBM19_RRM2_MRD1 305 378 - -
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 562 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 621 694 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 71 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 719 786 IPR000504 GO:0003723
Bda07g00874 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 376 IPR000504 GO:0003723
Bda07g00874 827 MobiDBLite consensus disorder prediction 94 120 - -
Bda07g00874 827 Gene3D - 489 592 IPR012677 -
Bda07g00874 827 Gene3D - 712 820 IPR012677 -
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 305 569 IPR035979 GO:0003676
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 717 793 IPR000504 GO:0003723
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Bda07g00874 827 SMART rrm2_1 305 378 IPR003954 GO:0003676
Bda07g00874 827 SMART rrm2_1 620 697 IPR003954 GO:0003676
Bda07g00874 827 SMART rrm2_1 718 789 IPR003954 GO:0003676
Bda07g00874 827 Gene3D - 615 711 IPR012677 -
Bda07g00874 827 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 813 - -
Bda07g00874 827 CDD RRM1_MRD1 2 77 - -
Bda07g00874 827 MobiDBLite consensus disorder prediction 808 827 - -
Bda07g00874 827 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Bda07g00874 827 Gene3D - 216 394 IPR012677 -
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Bda07g00874 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 619 701 IPR000504 GO:0003723
Bda07g00874 827 CDD RRM6_RBM19_RRM5_MRD1 717 791 - -
Bda07g00874 827 SUPERFAMILY RNA-binding domain, RBD 617 793 IPR035979 GO:0003676
Bda07g00874 827 MobiDBLite consensus disorder prediction 239 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00874 K14787 MRD1, RBM19; multiple RNA-binding domain-containing protein 1 - vvi:100247562 1018.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00874 Bda-Chr7:10204933 Bda01g01608 Bda-Chr1:51929890 1.97E-09 dispersed
Bda08g00947 Bda-Chr8:17789171 Bda07g00874 Bda-Chr7:10204933 5.44E-07 dispersed
Bda10g00078 Bda-Chr10:1677515 Bda07g00874 Bda-Chr7:10204933 2.54E-09 dispersed
Bda07g00874 Bda-Chr7:10204933 Bda14g00509 Bda-Chr14:3707904 1.05E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g90 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008976 1 1 1 1 1 0 2 0 0 1 0 0 2 1 1 1 0 2 2 0 1 1 1 1 1 0 1 1 7 1 32