Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00890 ATGGGCCAGAAGTCTCTGATCTACGCTTTTGTTTCTCGCGGAACTGTGATTCTCGCGGAGTACACTGAATTTAGCGGAAATTTCAATTCTATTGCGTTTCAGTGCCTTCAGAAATTACCTGCTACTAGCAACAAGTTTACCTACAACTGCGATGGCCACACCTTTAATTATCTTGTTGATAATGGATACACATACTGCATAGTTGCGGCTGAATCATCTGGAAGACAACTTCCTATGGCATTTTTGGAGCGCGTGAAGGATGATTTTGTGTCAAAATATGGTGGAGGAAAGGCTGCCACTGCTTCTGCCAACAGCCTGAACAAGGAATTTGGGTCAAAATTGAAGGAACACATGCAGTATTGTGTTGATCATCCTGAAGAGATAAACAAGCTTGCAAAGGTTAAAGCTCAGGTTTCTGAAGTAAAAGGTGTTATGATGGAGAATATCGAAAAGGTTTTAGATAGAGGAGAGAAGATAGAGCTTCTAGTGGATAAGACAGAGAACCTTCATCAACAGGCACAAGACTTCCGGAGTCAAGGAACAAAAATTCGGCGGAAAATGTGGCTGGCAAACATGAAGATCAAGCTAATTGTTTTGGGAATTCTGATAGTACTGATCCTCATCATAGTCCTTTCAATTTGCCGTGGCTTTAACTGTGGTAAAAAGTAA 669 41.26 MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATSNKFTYNCDGHTFNYLVDNGYTYCIVAAESSGRQLPMAFLERVKDDFVSKYGGGKAATASANSLNKEFGSKLKEHMQYCVDHPEEINKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSQGTKIRRKMWLANMKIKLIVLGILIVLILIIVLSICRGFNCGKK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10404755 10409568 - Bda026030.1 Bda07g00890 9780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00890 222 PANTHER SNARE PROTEINS 1 170 - -
Bda07g00890 222 SMART Longin_2 31 113 IPR010908 -
Bda07g00890 222 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 170 - -
Bda07g00890 222 CDD R-SNARE 129 188 - -
Bda07g00890 222 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Bda07g00890 222 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Bda07g00890 222 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Bda07g00890 222 CDD Longin 7 121 IPR010908 -
Bda07g00890 222 Gene3D - 128 214 - -
Bda07g00890 222 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Bda07g00890 222 Gene3D Longin domain 1 127 - -
Bda07g00890 222 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Bda07g00890 222 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Bda07g00890 222 Pfam Synaptobrevin 129 214 IPR042855 -
Bda07g00890 222 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Bda07g00890 222 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Bda07g00890 222 SUPERFAMILY SNARE fusion complex 124 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00039 Bda-Chr1:5334437 Bda07g00890 Bda-Chr7:10404755 5.11E-117 dispersed
Bda05g00888 Bda-Chr5:57318793 Bda07g00890 Bda-Chr7:10404755 2.15E-122 dispersed
Bda07g00890 Bda-Chr7:10404755 Bda15g00130 Bda-Chr15:3719534 7.73E-95 dispersed
Bda07g00890 Bda-Chr7:10404755 Bda03g01119 Bda-Chr3:11689013 6.58E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00890 K08511 - gmx:100779673 390.963