Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00896 ATGATCTATCATGACAAAGCTGGATGTATTGGTGCTTTAATAACTCGTCCATTCATTCTTTGTTCTGGGCGTAATGTTATTATCTCTGATTCTAAAACGATAAAAGTTGTCAACGATGGTGTTACAATTGCCAATTCTATCGAGCTATCTGATGCAGTGGAAAATGCAGGGGCAATTCTAATCCAAGAGGTTGCAATTAAAATGAATAATTTGGCCGGTGATGGAACTTCAACGGCTATAATTTTGGCACGGGCAATGATCAAAGCAGGGTTATTGGCAGTTTCCTCCGGAGCTAATCCAATTTCTTTGAGGAAAGGAATGGATAACACTGTCAAAGAATTGATAAAGATCTTAAAGAAGAAAAGTTTTCCGGTGAAGGGAAAGGATGATATTAGAGCTGTAGCCTCAATTTCATCAGGCAACAATGAATTCATTGGTAACTTAATTGCCGACACAATCGAGAAGATTGGTCCAGATGGAGTTATCTCCATTGAGTCATCCAAATCTTCTGAGACCTCTGTTATAATTGAAGAGGGAATTAAGTTTGACAAGGGTTACATGTCATCTCAGTTTATCACAAACCAAGACAAGTCTATAGTGGAGTTTGAGAAAGCAAAAGTCCTAGTAACTGATCAAAAGATTTCAACAGTCAAAGAAATTATTCCTATTCTGGAAAAGACGACCCAACTCAGTGTTCCATTGCTAATCATTGCAGAGGATATCTCAAGGCAAGTGCTGGAAACACTTGTACTAAACAAAGAGCAAGGTTTGCTCAATGTAGCAGTTGTGAAATGTCCGGGATTTGGGGAAGGAAAGAAAGCTCTTTTGCAAGATATTGCCCTGATGACAGGTGCTGATTTTCTTTGTGGAGAATTGGGTTTGACCCTTGAAGCTGCAACTTCAGATCAGCTTGGTGTTGCCCAGAAAATAATCATATCAAGTAATTCAACGACAATATTTTCTGATCCATCAACTAAAGCTGAAATTCAAGCTAGGATTTCACAAATCAAGAAAGATCTTGCTGAGTCCGATAATCCAAACATTTCAAGAAAGCTTTCAGAAAGGATTGCAAAGCTCTCCGGCGGCTTTGCCGTGATTAAGGTTGGAGCGCACACTGAGATGGAGCTCGAGGATCGGAAACTCAGAATCGAGGATGCGAAGAACGCAACTATGGCTGCCATGGAAGAAGGGATTGTTCCAGGTGGTGGTGCTTCTTATGTTCATCTCACTGCACTAATACCTACCATAAAGAAGTCTTTGCAGAATCAAGATGAGAAACTTGGTGCTGATATTGTAGCTGAGGCACTGCTTGCTCCTGCAAAATCTATAGCATATAATGCAGGAGAGGATGGATCGATGGTGGTCGAGAAGACGACAACTTCTGATTGGCAGATGGGATACAACGCAATGACGGGAAATTACGAAGATCTTCTAGAGGCCGGAGTTATAGATCCTTGTCGGGTTTCAAGATGTGCCCTTCAAATTGCAGCCTCTATTGCCGGCATTATTTTAACGACCGAAGCTATAATGGTTGAGAAAACAAAGAAACCAAAGCCGCAAATTCCGCATGTACCCGGAATAAGTTCATGA 1590 40.94 MIYHDKAGCIGALITRPFILCSGRNVIISDSKTIKVVNDGVTIANSIELSDAVENAGAILIQEVAIKMNNLAGDGTSTAIILARAMIKAGLLAVSSGANPISLRKGMDNTVKELIKILKKKSFPVKGKDDIRAVASISSGNNEFIGNLIADTIEKIGPDGVISIESSKSSETSVIIEEGIKFDKGYMSSQFITNQDKSIVEFEKAKVLVTDQKISTVKEIIPILEKTTQLSVPLLIIAEDISRQVLETLVLNKEQGLLNVAVVKCPGFGEGKKALLQDIALMTGADFLCGELGLTLEAATSDQLGVAQKIIISSNSTTIFSDPSTKAEIQARISQIKKDLAESDNPNISRKLSERIAKLSGGFAVIKVGAHTEMELEDRKLRIEDAKNATMAAMEEGIVPGGGASYVHLTALIPTIKKSLQNQDEKLGADIVAEALLAPAKSIAYNAGEDGSMVVEKTTTSDWQMGYNAMTGNYEDLLEAGVIDPCRVSRCALQIAASIAGIILTTEAIMVEKTKKPKPQIPHVPGISS 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10502506 10506148 + Bda026036.1 Bda07g00896 9786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00896 529 Pfam TCP-1/cpn60 chaperonin family 23 513 IPR002423 GO:0005524
Bda07g00896 529 CDD GroEL 23 512 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 Gene3D - 22 510 IPR027413 -
Bda07g00896 529 PANTHER CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC 23 528 - -
Bda07g00896 529 Gene3D - 124 397 IPR027410 -
Bda07g00896 529 Gene3D GroEL 179 360 IPR027409 -
Bda07g00896 529 SUPERFAMILY GroEL equatorial domain-like 25 512 IPR027413 -
Bda07g00896 529 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 23 528 - -
Bda07g00896 529 TIGRFAM GroEL: chaperonin GroL 22 515 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 SUPERFAMILY GroEL apical domain-like 172 362 IPR027409 -
Bda07g00896 529 SUPERFAMILY GroEL-intermediate domain like 124 190 IPR027410 -
Bda07g00896 529 PRINTS 60kDa chaperonin signature 70 97 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 385 406 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 255 278 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 337 362 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 SUPERFAMILY GroEL-intermediate domain like 351 396 IPR027410 -
Bda07g00896 529 ProSitePatterns Chaperonins cpn60 signature. 392 403 IPR018370 GO:0005524|GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00896 - - - tcc:18607056 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00639 Bda-Chr7:7738081 Bda07g00896 Bda-Chr7:10502506 0 dispersed
Bda07g00896 Bda-Chr7:10502506 Bda09g00347 Bda-Chr9:4408881 2.75E-151 dispersed
Bda07g00896 Bda-Chr7:10502506 Bda09g00206 Bda-Chr9:2918890 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001380 3 4 2 3 2 2 3 2 2 2 1 2 3 2 2 3 2 3 3 2 2 2 3 2 3 2 2 5 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g00896 Bda_Chr07 FPKM 4.488449 3.547627 4.921574 3.006437 11.237067 4.4412 9.613829 4.535291 3.722769