Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00896 ATGATCTATCATGACAAAGCTGGATGTATTGGTGCTTTAATAACTCGTCCATTCATTCTTTGTTCTGGGCGTAATGTTATTATCTCTGATTCTAAAACGATAAAAGTTGTCAACGATGGTGTTACAATTGCCAATTCTATCGAGCTATCTGATGCAGTGGAAAATGCAGGGGCAATTCTAATCCAAGAGGTTGCAATTAAAATGAATAATTTGGCCGGTGATGGAACTTCAACGGCTATAATTTTGGCACGGGCAATGATCAAAGCAGGGTTATTGGCAGTTTCCTCCGGAGCTAATCCAATTTCTTTGAGGAAAGGAATGGATAACACTGTCAAAGAATTGATAAAGATCTTAAAGAAGAAAAGTTTTCCGGTGAAGGGAAAGGATGATATTAGAGCTGTAGCCTCAATTTCATCAGGCAACAATGAATTCATTGGTAACTTAATTGCCGACACAATCGAGAAGATTGGTCCAGATGGAGTTATCTCCATTGAGTCATCCAAATCTTCTGAGACCTCTGTTATAATTGAAGAGGGAATTAAGTTTGACAAGGGTTACATGTCATCTCAGTTTATCACAAACCAAGACAAGTCTATAGTGGAGTTTGAGAAAGCAAAAGTCCTAGTAACTGATCAAAAGATTTCAACAGTCAAAGAAATTATTCCTATTCTGGAAAAGACGACCCAACTCAGTGTTCCATTGCTAATCATTGCAGAGGATATCTCAAGGCAAGTGCTGGAAACACTTGTACTAAACAAAGAGCAAGGTTTGCTCAATGTAGCAGTTGTGAAATGTCCGGGATTTGGGGAAGGAAAGAAAGCTCTTTTGCAAGATATTGCCCTGATGACAGGTGCTGATTTTCTTTGTGGAGAATTGGGTTTGACCCTTGAAGCTGCAACTTCAGATCAGCTTGGTGTTGCCCAGAAAATAATCATATCAAGTAATTCAACGACAATATTTTCTGATCCATCAACTAAAGCTGAAATTCAAGCTAGGATTTCACAAATCAAGAAAGATCTTGCTGAGTCCGATAATCCAAACATTTCAAGAAAGCTTTCAGAAAGGATTGCAAAGCTCTCCGGCGGCTTTGCCGTGATTAAGGTTGGAGCGCACACTGAGATGGAGCTCGAGGATCGGAAACTCAGAATCGAGGATGCGAAGAACGCAACTATGGCTGCCATGGAAGAAGGGATTGTTCCAGGTGGTGGTGCTTCTTATGTTCATCTCACTGCACTAATACCTACCATAAAGAAGTCTTTGCAGAATCAAGATGAGAAACTTGGTGCTGATATTGTAGCTGAGGCACTGCTTGCTCCTGCAAAATCTATAGCATATAATGCAGGAGAGGATGGATCGATGGTGGTCGAGAAGACGACAACTTCTGATTGGCAGATGGGATACAACGCAATGACGGGAAATTACGAAGATCTTCTAGAGGCCGGAGTTATAGATCCTTGTCGGGTTTCAAGATGTGCCCTTCAAATTGCAGCCTCTATTGCCGGCATTATTTTAACGACCGAAGCTATAATGGTTGAGAAAACAAAGAAACCAAAGCCGCAAATTCCGCATGTACCCGGAATAAGTTCATGA 1590 40.94 MIYHDKAGCIGALITRPFILCSGRNVIISDSKTIKVVNDGVTIANSIELSDAVENAGAILIQEVAIKMNNLAGDGTSTAIILARAMIKAGLLAVSSGANPISLRKGMDNTVKELIKILKKKSFPVKGKDDIRAVASISSGNNEFIGNLIADTIEKIGPDGVISIESSKSSETSVIIEEGIKFDKGYMSSQFITNQDKSIVEFEKAKVLVTDQKISTVKEIIPILEKTTQLSVPLLIIAEDISRQVLETLVLNKEQGLLNVAVVKCPGFGEGKKALLQDIALMTGADFLCGELGLTLEAATSDQLGVAQKIIISSNSTTIFSDPSTKAEIQARISQIKKDLAESDNPNISRKLSERIAKLSGGFAVIKVGAHTEMELEDRKLRIEDAKNATMAAMEEGIVPGGGASYVHLTALIPTIKKSLQNQDEKLGADIVAEALLAPAKSIAYNAGEDGSMVVEKTTTSDWQMGYNAMTGNYEDLLEAGVIDPCRVSRCALQIAASIAGIILTTEAIMVEKTKKPKPQIPHVPGISS 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10502506 10506148 + Bda026036.1 Bda07g00896 9786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00896 529 Pfam TCP-1/cpn60 chaperonin family 23 513 IPR002423 GO:0005524
Bda07g00896 529 CDD GroEL 23 512 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 Gene3D - 22 510 IPR027413 -
Bda07g00896 529 PANTHER CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC 23 528 - -
Bda07g00896 529 Gene3D - 124 397 IPR027410 -
Bda07g00896 529 Gene3D GroEL 179 360 IPR027409 -
Bda07g00896 529 SUPERFAMILY GroEL equatorial domain-like 25 512 IPR027413 -
Bda07g00896 529 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 23 528 - -
Bda07g00896 529 TIGRFAM GroEL: chaperonin GroL 22 515 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 SUPERFAMILY GroEL apical domain-like 172 362 IPR027409 -
Bda07g00896 529 SUPERFAMILY GroEL-intermediate domain like 124 190 IPR027410 -
Bda07g00896 529 PRINTS 60kDa chaperonin signature 70 97 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 385 406 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 255 278 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 PRINTS 60kDa chaperonin signature 337 362 IPR001844 GO:0042026|GO:0140662
Bda07g00896 529 SUPERFAMILY GroEL-intermediate domain like 351 396 IPR027410 -
Bda07g00896 529 ProSitePatterns Chaperonins cpn60 signature. 392 403 IPR018370 GO:0005524|GO:0006457
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00639 Bda-Chr7:7738081 Bda07g00896 Bda-Chr7:10502506 0 dispersed
Bda07g00896 Bda-Chr7:10502506 Bda09g00347 Bda-Chr9:4408881 2.75E-151 dispersed
Bda07g00896 Bda-Chr7:10502506 Bda09g00206 Bda-Chr9:2918890 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00896 - - tcc:18607056 776.548