Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00904 ATGTCCACCATTAGAGCATATGCGAAGTTCAGCGAAGCCGAGCAGATGATGCTCGATGCTCGCCGGAGAACCAGAAAGAGAATTGTCATTATCGTTTTATCTTCTGTTGTTCTCGTGGGCGTTGTTCTAGCTGCTGTTTTTGGAACTGCAAGCTCCAGAAATGGAGGAAAATCTAACAATGGTGGAAACGCTAACCCTCTCTCTACCTCTATTAAAGCAGTCTGCGACGAGACTGTGTACCCAGATAGCTGTTACAGCGCTCTCAATCCTTTGAAAAACTCGAGTCAGCTCACGCCGCAGGAGATTTCGAAGACGATAATTCAGGCCGCCATTAATGAGCTATCAGAAGTTTCAGGCTACATTTTCGACGACGCTATAAAGAACTCTACTGATAACATGACGATTCAAACTTTGAAAAACTGCCAGGAGCTTCTGGATTTAGCTCTAGACCACTTGAATATGTCTCTAGACCACTTGAATATGTGTCTCTCCTCGTCGAACGCCTCTCTAACTGACACCATTGATGACCTCCGAACATGGCTGAGCTCCGCGACAACGTATCAACAAACCTGCATAGATGGGTTGGAAGACGTTAATGAAGCACTGAAAAATTCCATTTCCGGGTACTTGAGAAACTCAACTGAATACTCATGCAACGGGCTGGCCATCGTCACGTGGCTGTCGAGCTTCACGGGGTCTCTGAAACTCCGGCGACTAATGGGGGAGCCGGAGTGGGTGAGCCCGGCGACGAGGCGGCTGTTGGAGAGCGATTTGAGGAACCAGGCGGATATAGTGGTGGCCAAAGATGGGTCGGGGAAGTACAAGACGATAAAGCAGGCGCTGAAGGCGGTGCCGGAAAAAAGCAAGAAGACGACGGTGATATACGTGAAAAAGGGGATTTACTACGAGAATGTGATAGTGGACAACACGATGTGGAATGTGGTTATGGTCGGAGATGGAATGACTTCCACCATTGTTTCTGCAAGTCTGAACTTCGTTGACGGCACTCCTACTTTCTCCTCTGCAACTTTCGCTGCAATGGGGCAAAACTTCATAGCAAGAGACATGGGTTTCCGCAACACCGCCGGAGCAAGCAAGCACCAAGCCGTCGCCCTCATGTCCGCCTCCGATCAATCCATCTTCTACCGCTGCCTCTTCGACGCCTACCAAGACACTCTCTACACCTATTCCAACCGCCAGTTCTACCAGGAATGCAACATCTACGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGTCATCCAAAGTTCCTTCATATTCCCCAAATTGCCGATGCAAGGCCAGCAAAACACGATCACGGCTCAGGGAAAGTTTGATCCCAATCAAAACACGGGCATTTCGATTCAAAACTGTACGGTCATGCCGTTCGGAAACCTAGGTTCTACTCAAACATACCTCGGTCGGCCGTGGAAGAACTACTCGACGACCGTTTATATTCAGAATAATCTGGGGTCTTTGATTAACCCCGCCGGATGGTTACCATGGGTCGGCGATTCGGCTCCGAGCACCATCTTCTACGCCGAGTTTCAGAATTTCGGAGCTGGGTCTTCGACTGCGAAGAGAGTGAAGTGGAAGGGAGTAAGGAATATTAATGGAGCTCAGGCGGGTAAGTTTACGGTTTCTTCGTTTCTTCAAGGCGGAAAGTGGATTTCGGCAGCCGGAGTTCCTTTCAAAGCCGGTCTGTAA 1710 49.47 MSTIRAYAKFSEAEQMMLDARRRTRKRIVIIVLSSVVLVGVVLAAVFGTASSRNGGKSNNGGNANPLSTSIKAVCDETVYPDSCYSALNPLKNSSQLTPQEISKTIIQAAINELSEVSGYIFDDAIKNSTDNMTIQTLKNCQELLDLALDHLNMSLDHLNMCLSSSNASLTDTIDDLRTWLSSATTYQQTCIDGLEDVNEALKNSISGYLRNSTEYSCNGLAIVTWLSSFTGSLKLRRLMGEPEWVSPATRRLLESDLRNQADIVVAKDGSGKYKTIKQALKAVPEKSKKTTVIYVKKGIYYENVIVDNTMWNVVMVGDGMTSTIVSASLNFVDGTPTFSSATFAAMGQNFIARDMGFRNTAGASKHQAVALMSASDQSIFYRCLFDAYQDTLYTYSNRQFYQECNIYGTVDFIFGNSAVVIQSSFIFPKLPMQGQQNTITAQGKFDPNQNTGISIQNCTVMPFGNLGSTQTYLGRPWKNYSTTVYIQNNLGSLINPAGWLPWVGDSAPSTIFYAEFQNFGAGSSTAKRVKWKGVRNINGAQAGKFTVSSFLQGGKWISAAGVPFKAGL 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10638223 10640890 - Bda026043.1 Bda07g00904 9794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00904 569 SMART PMEI_2 66 223 IPR006501 GO:0004857
Bda07g00904 569 Pfam Pectinesterase 263 554 IPR000070 GO:0030599|GO:0042545
Bda07g00904 569 Pfam Plant invertase/pectin methylesterase inhibitor 70 223 IPR006501 GO:0004857
Bda07g00904 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 228 IPR035513 -
Bda07g00904 569 TIGRFAM PME_inhib: pectinesterase inhibitor domain 37 227 IPR006501 GO:0004857
Bda07g00904 569 CDD PMEI-like_3 73 229 - -
Bda07g00904 569 Gene3D - 258 569 IPR012334 -
Bda07g00904 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 229 IPR035513 -
Bda07g00904 569 SUPERFAMILY Pectin lyase-like 261 568 IPR011050 -
Bda07g00904 569 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Bda07g00904 569 PANTHER PECTINESTERASE 5 567 - -
Bda07g00904 569 PANTHER PECTINESTERASE 5 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00808 Bda-Chr1:38112810 Bda07g00904 Bda-Chr7:10638223 0 dispersed
Bda05g00626 Bda-Chr5:54343379 Bda07g00904 Bda-Chr7:10638223 7.67E-165 dispersed
Bda07g00904 Bda-Chr7:10638223 Bda12g00427 Bda-Chr12:5239006 7.76E-149 dispersed
Bda12g00428 Bda-Chr12:5272201 Bda07g00904 Bda-Chr7:10638223 2.09E-130 dispersed
Bda15g00618 Bda-Chr15:9359230 Bda07g00904 Bda-Chr7:10638223 1.84E-19 dispersed
Bda07g00904 Bda-Chr7:10638223 Bda05g00625 Bda-Chr5:54329566 1.11E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00904 - - mcha:111010791 725.317