Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00948 TTTGGGTTGCGAGGTAGGGAAATGGATACGACTCCTGTTTCTTCTCCAGGTGCAAGTGACATGAGGCCTCGTAACAGTAAGGCGACCTCCATTACCGACAGAGACAAAACCATTGCTCAGTATAACGCAGACGCTCGGCTTTTGGCTAATTTTGAGAAGTCTACCGAGTCTGGTGAGTCTTTTAACTACTCGAGATCAGTTTTGCAGAGTTGTCAATCTGTGCCCGAAGAACAAATTACTGCTTATTTATCGATAATCCAAAGGGGTGGTCTAATTCAGCCATTTGGTTGCATGATCGCTGTCGAAGAAACCAGTCTAAAAATTATCGGTTATAGTGAGAATTGCTCTGATCTATTGGGTTTAAAGTCTCAATCAAAGTTAAAACAGGCAAAAAGTCTGATTGGAATTGATGTTAGAACACTTTTTACTCCTTCATCAAGTACTTCTTTAGTGAACGCTGCCGCGTCCAGGGAGATTTCGTTTCTAAACCCGATATGGGTTTATTCTAAGACATCCCAGAATCCATTTTATGCAATATTGCATAGAATTGACGTGGGAATTGTGATCGATTTGGAGCCTACAAAGTCGGGTGATCCTGCGATATCACTTGCAGGGGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATTGGTGCTTTATGTGACATTGTTGTGGAAGATGTTCAGAAGCTTACTGGGTATGACAGGGTGATGGCCTACAAATTCCACGATGATGATCATGGCGAGGTGGTTTCAGAGCTTAGAAGATCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTTCCACAGATATTCCTCAAGCTGCTCGTTTTCTGTTCAAGCAGAACAGAATCCGAATGATCTGCGATTGCCATGCAAAACCTATTAAGATCATTCAAAGTGAGAAGCTAAAACAGTCTTTATGCTTAGTCAATTCAACTCTTCGATCACCTTATGGTTGTCATGCTCAATATATGATCAACATGGGCTCTATTGCTTCACTAGTAATGGCTGTCCTCATAAGAAGTAACAACGGGACAAAGCTTTGGGGGATCATCGTTTGCCACCACACTTCGCCCCGCTACCTCCCCTTCCCTATTCGTTATGCTTGCGAGTTACTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGTTTCGATTGGCATCACAATTAATGGAAAAGAACATTCTCAAAACTCAAATCTTAATCTCAGACATGCTTCTCCGAGACGGTCCTTACAGTCTAGTGACTCAATCTCCGAGTATTATGGATCTCGTGAAATGTGACGGAGCTGCATTGTACTACAACGGAACATGTTGGCTTTTGGGTGTGACACCATCCGAATCGCAAGTAATGGATATTGCAGAGTGGCTTCTTAATGATCATCAGGATTCTACCGGGTTGAGTACAGATACTTTAGTGGATTCTGGCTATCCTGGCGCAGCTTCACTGGGAGATGCAGTGTGTGGCATGGTAGCCGCGAGAATCAACTTAAAGGATTTCTTATTCTGGTTCAGATCTCGTGCAGCGAAAGAAGTGAAATGGGCCGGAGCAAAGCATCATCCTGAAGATAAGGACGATGGTGGAAAATTGCACCCAAGATCTTCTTTCAACGCCTTTCTTGAAGTCGTCAAAAATAGTAGTTTTCCTTGGGAGGTTTCGGAAATTAACGCCGTTCACACTTTGCAACTTATAATCAGAGATTCACTGCAGAACTTCAAAGACACGAGTACAAAAGGCCTAATTACTGCACAGCTGAGTGGTTCTGAGATGCAGAGGGTAGATGAACTTAGTTCGACTGCGAGGGAAATGCTTAGATTGATTGAGACAGCCACAGTTCCCATTTTTGGGGTTGATTCAGCTGGTCTTATCAATGGATGGAATGCTAAAATTTCTGAACTGACTGGATTAGAATCTAGTAACGCCATGGGAAAATCTTTGGTGGGTGAGGTTACTCATGAGGATTCTCGTCAAACAGTTGGAAATGTCCTTGGTCGTGCTTTGAAAGGCGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAGTTTTACATGCGATAGAAGAGAATCTGCCTTGTATATTGTGGTCAATTCCTGCACAAGCCGGGACTATAGGAACCAAGTCATTGGCGTTTGCTTCGTAGGTCAAGATATTACAGCGGAGAAAATCGTAATGGATAAATTTATTCAACTACAAGGTGATTACAAGGCTATAATCCATAGTCTCAACCCCTTTTTTCCACCCATATTTGCCTCTGATGTGAATGCTTGCTGCTCTGAGTGGAATGCAGCCATGGAAAAACTAACTGGTTGGAAAAGAGATGAAGTTATAGGAAAAATTCTACCCGGAGAAGTTTTTGGAACGTTCTGTCGATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTACAGAAGCATTCTTGGTCAAGAAACTGAGGAGCTTCCATTTGGATTTTTCAATCGAAAAGGAATATTTGTCAAGGTGCTCTTAACAGCAAACAAGAGGGCGGATGGAGCTGGAGATATCATCGGCTGTTTCTGCTTCTTGCAGATTGCTGAGCATGTTGCTGAAGAACCCGTGGAAGAGGAGGGAGAGAGCTTTTTGCAATTGACGGAGTTGGCGTATATTCGGCAGGAGATAAACAATCCGTTGAACGGTATTAGATTTATCCACGAGCTTCTCGAGAGTAGCTGCATCGAGGAAAATCAGAAACTATTTCTTAATACCTGTCATGCATGTGAGAGACAGATCATGATGATCATGGAGGACAATAATTTGAGAACCATAGAAGGAGGAAGTATAGAGCTAAACGTCGAAGAATTTCTGCTGGGTGATGTTTTTGATGCCATTATCGGTCAAATCATGATCCTCGTGAGGAAGAAGCAGCTACAGCTTCAACACGAAATCCGGGAAGATATCGAGTCATTAATCCTTTATGGTGATCAAATTAAGTTACAGTTAGTTCTGTCCGATTTTTTGCTCAATGTAGTGAATTACGCACCTTCTCCCGGTGGGTGGGTCGAAATCAACATCTCAACGATTTTAATATCGATCGAAGATGGCCAAAACAAGATCCACTTGCAGGTCAGAATGACACACCCTGGTGAAGGTCTGCCATCAACGTTGGTCCAAGAAATGTTTGGAGAAGGAGAGCAATGCACTTCACATGAAGGTCTTGGGCTAAACCTCTCTAGAGAACTTCTGAGCAAGATGAATGGAAATGTTCATTATGTCAGAGAACACAATAAATGCTATTTCCTCGTCGATCTCGAGCTTCAAATGAAGAGAGATATACCCGAAGAGCCTAAAGCTATTGTTGAAACTACTGAGGTTCAGTCAGGATTCGTTGAAGTTGGCTATATATCGGGGGCTCATGGTATTCAAGGGGAAATTCGTGTAAAACCTAGTACTGGTTTTCCTGAATTGCGATTTTCTGAGCCTGGCAAAAGATGGTTGAAGCAAGAAACTCTAGGAAGGGAAAGCATTCGGGAAGTTGAACTGATGGAAGGAAGGGGACACCCAGGTCAAAAGAGCTGGATACTAAAGTTTCAAGGAATTGACACTGCAGAAGAGGCTAAGCTACTTACTGGGTCAAAATTACTCGTGAGGGAAGAAGATCGACCAGAGTTGGAGGAAGGTGATTTTTATACCCGTGATCTTCTTGGCATGAGAGTCATAATTAAGGAAACTGAGGAGCTTTTGGGAACTGTTACCAATGTCTACAACAGCGGAGGGAATGATCTTTTACAGGTCATGGTGAATCATTCAAAAGATGCTGGAGTGTCTGGACGTACTGTGTGGATACCTTTTGTTGAAGCAATAGTTCCAGATGTTGATGTTATCAGAAGGGAAATGCATATTACTCCACCAAAGGGGCTTTTAGAGTTGAATTTACGTGCAGATGAGAGATCAAAAAAAGAAAGGCGTCAACTTGAATGGAAAGAGAGAAAAAAGTTCCAAAAGCGACTCATAGCAGCAAAAAAGAAACTTTGTGAAATGGAGCAGCAACATGTATTTCACGGCTTCAAATTTGGCGAAAATTTTTCTATCAGATGGACGATGACTGAATTATCGAATGCCATAGAATGTGAGACCCTAAAGAATTCCTTGAAAATTTCAGAGGAATGCTTCGTTTCAAATGGAAAAGAGGAGACGCAAAATGATATTGTTAGTTGTAAGGAGGAGGGACTTCGTCTCACATCCGACAGAAAAACTGCCATTGTTTTAGTCGTAAATGAAGAGGGTTGGGAGGATATCTCTGATATTGCCAAGTGTGGAAGCACTAAGAATCCATCTTCTCTCCTTCAGACTCTGCTTGATGATGCTCAGAGATTTGCGCATATTCAATACAGGCAACTCGTCCCCCTGATATTGGTTTGCTCGGCTAGCAGAATTTCTTCAATTCAAAAGTTATTCTTGGATAATGATTACTTTGCTTTTGACTCGAAAAAAGTGTGGTTCTTGGAAGAAGAGAAGCTTCCAGTAGTCGGCCATTTGGTTGAGGAACAGAAATGGAGAAAAATTTTGATGAAATCACCATGGGAAATTCTTCAGTCACCTGTTGGATCTGGAGGAGTTATGAACTTGCTTTTGTCTCACAATCTCATTGATGATATTGGCGAAATGGGTATTGACTATGTTGAGGTGTGCTCTAGTAGTCAAAATTACGCGGGAATGAATTCGCTACTACTTGGGTTTCTTAATTCATGCAAAGCCGATGTTGGAATCCAACTTTTCGAAAACACGAACAATGACGAAAGTTTTGACATGATATTCTCGATTCAGTTTTTAAAGAAGTTGGCCAAACAGATGAATAAACTCCAATTCTACGCAATTCCGAACTCAAATTCTCACGTTGAGATGGTTGATAAAGAATGGATCGACGTCGAGCCTTCAACAGCCAACTCAAACGAGCTTCGATGCTCGATTCTCAGTTCCTTAAACATATGTTCAATGGATAAGGTATGTGCTATAAAGATTGGTGAATAG 5034 41.95 FGLRGREMDTTPVSSPGASDMRPRNSKATSITDRDKTIAQYNADARLLANFEKSTESGESFNYSRSVLQSCQSVPEEQITAYLSIIQRGGLIQPFGCMIAVEETSLKIIGYSENCSDLLGLKSQSKLKQAKSLIGIDVRTLFTPSSSTSLVNAAASREISFLNPIWVYSKTSQNPFYAILHRIDVGIVIDLEPTKSGDPAISLAGAVQSQKLAVRAISRLQSLPGGDIGALCDIVVEDVQKLTGYDRVMAYKFHDDDHGEVVSELRRSDLEPYLGLHYPSTDIPQAARFLFKQNRIRMICDCHAKPIKIIQSEKLKQSLCLVNSTLRSPYGCHAQYMINMGSIASLVMAVLIRSNNGTKLWGIIVCHHTSPRYLPFPIRYACELLMQAFGLQLYMEFRLASQLMEKNILKTQILISDMLLRDGPYSLVTQSPSIMDLVKCDGAALYYNGTCWLLGVTPSESQVMDIAEWLLNDHQDSTGLSTDTLVDSGYPGAASLGDAVCGMVAARINLKDFLFWFRSRAAKEVKWAGAKHHPEDKDDGGKLHPRSSFNAFLEVVKNSSFPWEVSEINAVHTLQLIIRDSLQNFKDTSTKGLITAQLSGSEMQRVDELSSTAREMLRLIETATVPIFGVDSAGLINGWNAKISELTGLESSNAMGKSLVGEVTHEDSRQTVGNVLGRALKGEEERDVELKLRSFTCDRRESALYIVVNSCTSRDYRNQVIGVCFVGQDITAEKIVMDKFIQLQGDYKAIIHSLNPFFPPIFASDVNACCSEWNAAMEKLTGWKRDEVIGKILPGEVFGTFCRLKGQDTLTKFMISLYRSILGQETEELPFGFFNRKGIFVKVLLTANKRADGAGDIIGCFCFLQIAEHVAEEPVEEEGESFLQLTELAYIRQEINNPLNGIRFIHELLESSCIEENQKLFLNTCHACERQIMMIMEDNNLRTIEGGSIELNVEEFLLGDVFDAIIGQIMILVRKKQLQLQHEIREDIESLILYGDQIKLQLVLSDFLLNVVNYAPSPGGWVEINISTILISIEDGQNKIHLQVRMTHPGEGLPSTLVQEMFGEGEQCTSHEGLGLNLSRELLSKMNGNVHYVREHNKCYFLVDLELQMKRDIPEEPKAIVETTEVQSGFVEVGYISGAHGIQGEIRVKPSTGFPELRFSEPGKRWLKQETLGRESIREVELMEGRGHPGQKSWILKFQGIDTAEEAKLLTGSKLLVREEDRPELEEGDFYTRDLLGMRVIIKETEELLGTVTNVYNSGGNDLLQVMVNHSKDAGVSGRTVWIPFVEAIVPDVDVIRREMHITPPKGLLELNLRADERSKKERRQLEWKERKKFQKRLIAAKKKLCEMEQQHVFHGFKFGENFSIRWTMTELSNAIECETLKNSLKISEECFVSNGKEETQNDIVSCKEEGLRLTSDRKTAIVLVVNEEGWEDISDIAKCGSTKNPSSLLQTLLDDAQRFAHIQYRQLVPLILVCSASRISSIQKLFLDNDYFAFDSKKVWFLEEEKLPVVGHLVEEQKWRKILMKSPWEILQSPVGSGGVMNLLLSHNLIDDIGEMGIDYVEVCSSSQNYAGMNSLLLGFLNSCKADVGIQLFENTNNDESFDMIFSIQFLKKLAKQMNKLQFYAIPNSNSHVEMVDKEWIDVEPSTANSNELRCSILSSLNICSMDKVCAIKIGE 1677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11021123 11031620 + Bda026090.1 Bda07g00948 9838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00948 1677 SMART pas_2 614 681 IPR000014 -
Bda07g00948 1677 SMART pas_2 745 815 IPR000014 -
Bda07g00948 1677 ProSiteProfiles Histidine kinase domain profile. 890 1109 IPR005467 -
Bda07g00948 1677 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1114 - -
Bda07g00948 1677 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1099 IPR036890 -
Bda07g00948 1677 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Bda07g00948 1677 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 995 1104 IPR003594 -
Bda07g00948 1677 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1338 1674 IPR029044 -
Bda07g00948 1677 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Bda07g00948 1677 SUPERFAMILY GAF domain-like 207 393 - -
Bda07g00948 1677 MobiDBLite consensus disorder prediction 1 32 - -
Bda07g00948 1677 Pfam PAS fold 746 865 IPR013767 GO:0006355
Bda07g00948 1677 Pfam PAS fold 615 730 IPR013767 GO:0006355
Bda07g00948 1677 MobiDBLite consensus disorder prediction 12 32 - -
Bda07g00948 1677 CDD PAS 760 865 IPR000014 -
Bda07g00948 1677 Pfam His Kinase A (phospho-acceptor) domain 888 946 IPR003661 GO:0000155|GO:0007165
Bda07g00948 1677 Pfam PAS fold 81 193 IPR013654 GO:0006355
Bda07g00948 1677 CDD PAS 623 730 IPR000014 -
Bda07g00948 1677 Pfam Phytochrome region 421 584 IPR013515 GO:0006355|GO:0009584
Bda07g00948 1677 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 387 IPR016132 -
Bda07g00948 1677 SUPERFAMILY Translation proteins 1130 1224 IPR009000 -
Bda07g00948 1677 Gene3D - 1225 1313 - -
Bda07g00948 1677 ProSiteProfiles PAS repeat profile. 746 791 IPR000014 -
Bda07g00948 1677 SUPERFAMILY GAF domain-like 405 583 - -
Bda07g00948 1677 Pfam PRC-barrel domain 1228 1309 IPR027275 -
Bda07g00948 1677 SMART gaf_1 227 407 IPR003018 GO:0005515
Bda07g00948 1677 PANTHER PHYTOCHROME E 34 1114 - -
Bda07g00948 1677 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1326 1666 IPR029044 -
Bda07g00948 1677 Gene3D RimM 1121 1223 IPR036976 GO:0006364
Bda07g00948 1677 Gene3D PAS domain 610 734 - -
Bda07g00948 1677 Gene3D PAS domain 759 871 - -
Bda07g00948 1677 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 726 IPR035965 -
Bda07g00948 1677 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 197 IPR035965 -
Bda07g00948 1677 SMART HisKA_10 883 947 IPR003661 GO:0000155|GO:0007165
Bda07g00948 1677 Hamap Ribosome maturation factor RimM [rimM]. 1130 1308 IPR011961 GO:0005840|GO:0006364|GO:0043022
Bda07g00948 1677 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Bda07g00948 1677 Gene3D - 402 575 IPR043150 -
Bda07g00948 1677 TIGRFAM 16S_RimM: 16S rRNA processing protein RimM 1131 1308 IPR011961 GO:0005840|GO:0006364|GO:0043022
Bda07g00948 1677 CDD HATPase_Phy-like 994 1107 IPR044767 -
Bda07g00948 1677 ProSiteProfiles PAS repeat profile. 612 683 IPR000014 -
Bda07g00948 1677 Gene3D - 208 558 IPR029016 -
Bda07g00948 1677 CDD HisKA 888 938 IPR003661 GO:0000155|GO:0007165
Bda07g00948 1677 Pfam RimM N-terminal domain 1132 1221 IPR002676 GO:0006364
Bda07g00948 1677 Gene3D - 946 1113 IPR036890 -
Bda07g00948 1677 Gene3D PAS domain 86 330 - -
Bda07g00948 1677 TIGRFAM sensory_box: PAS domain S-box protein 619 734 IPR000014 -
Bda07g00948 1677 SUPERFAMILY PRC-barrel domain 1230 1308 IPR011033 -
Bda07g00948 1677 Pfam GAF domain 227 396 IPR003018 GO:0005515
Bda07g00948 1677 SMART HKATPase_4 995 1109 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00015 Bda-Chr2:920547 Bda07g00948 Bda-Chr7:11021123 2.39E-06 dispersed
Bda06g00414 Bda-Chr6:6278738 Bda07g00948 Bda-Chr7:11021123 0 dispersed
Bda07g00948 Bda-Chr7:11021123 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda01g00824 Bda-Chr1:38924388 Bda07g00948 Bda-Chr7:11021123 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00948 K12123 - zju:107413117 1581.62