Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g00963 ATGGCTACTGCGGCAATATTCTCGTCGTTGCGGCGGCGAAGATCGCCGTCTTTAGAGGTTTTGTTAGCTCCGGTCGACCTCAATGATGTATCGCTTGTACAAACGCTTGCTTCGGTCGCTGCCGATCTTGTTTCGTGTTTTATACAGAAATCGTTCTTCTTTCAGCGCAAAAATTCGAGGTCTCTGATACGGAAAGTGGACGTTTTTCTCGTGTTCTTGCAGTATCTGAAGGACTCCGGCTCGAGTTTGCCTACCACGGCAGTGATTTGCTTCAAAGAGCTTTACTTGTTACTGTATCGATCGAAGATCCTCCTCGATTATTGCTCTCAATCGTGTAAGTTATGGCTACTGCTTCAAAATCATCCTATTTCTGTGCATTTCCATGATTTAAACCTGGAAATTTTGACCATTCTGGACGTGTTTCCCTTTGACGAAGTTAAATTGGATATAGACATTAGAGAGCAGATTAAGCTATTACAGAACCAACTGAGAAGGGGGAAATTGTACATAGAGAAGCACGATGAGGTGCTGCGAATTCAGTTGTTTTCGTTTCTCCATGATTTTGAGAATGGAAAGATTCCGGATTCTGGGAAAATGAAGGAGTTCTTCGTGGAAAGATTGGAGATAAAGACTGCAAACAATTGCAGAGCTGAAATTGAGCATTTGGAAGAACAGATTGTGAATCACGATGGAGATATCGAGACAACAATATCGGTTCTTAGTGGATTTGTTGCACTTACGAGGTATAGTAGATTTTTGCTGTTCGGGTTTCACGGAGAGGAATTAGAATCAAGCGATAGAAATCAGAAGATGAGAAATAGGTTGATTAAGCAAGAAACTGTAGAAACTCTCGTAACAATCCCAAAGGATTTTTGCTGTCCAATCTCACTGGAATTGATGACAGACCCAGTGATTATAGCAACAGGACAGACATATGATCGTTGTTCAATAGCTCGGTGGATTGAAGAAGGGCATTGTAATTGTCCGAAAACGGGGCAAATGCTTGTCCACAATAATCTTGTTCCAAATCGAGCTTTGAGAAATTTAATCATGCAGTGGTGCTCTGCCCATGGAGTTGCTTATGATCCACCAGAAGGCATGGATTCTTCTGCAGAAAAGCTTGCTGCAGCTTCCTCCTATAGAGCTGCAGTGGAGGCCAACCGAGCAACAACTCAGCTTCTGATCCAACAGCTTGCAAATGGGTCACAAGAGGGGAAGACCATAGCTGTGCAAGAAATACGATTATTGGCAAAAACTGGAAAAGAAAACCGTGCCTTCATAGCAGAAGCCGGGGCCATTCCCCATCTTCTAAATCTGCTTTCTTCTCCAAACCATGTTGCTCAAGAGAATTCAATCACTGCGATACTTAATCTTTCGATCTACGACAAGAACAAGAGTCAAATCATGGAGGAAGAAGGGTGTTTAAGATTGATAGTAAGGGTTCTGAAGTTGGGAGGGTTGACATCAATGATGAGAGGTGGAACGGCAAGAGGGAAAGAGAATGCAGTGGCAGCTCTGCTTGAGCTTTGTCGGACTGGCGGAGCAGCTGCAACTGAGAGGGTGGTAAGAGCTCCGGCTTTAGCCGGTTTGCTCCAAACCCTCTTGTTTACAGGCACAAAACGGGCTCGGAGAAAGGCGGCTTCTCTTGCAAGAATGTTTCAAAGGTGTGAAAATATCACCTTGCATTATAGCGAATTGGGGGTCGGATATGCATTTTCGAGCAATTCAGCTGCAGGGAGAGAGTCGAGCTTCGTCGGAGATATGTCAGCTGTGTCGATTCCCATTTCAGTGCCGGTTTTGTAG 1803 44.26 MATAAIFSSLRRRRSPSLEVLLAPVDLNDVSLVQTLASVAADLVSCFIQKSFFFQRKNSRSLIRKVDVFLVFLQYLKDSGSSLPTTAVICFKELYLLLYRSKILLDYCSQSCKLWLLLQNHPISVHFHDLNLEILTILDVFPFDEVKLDIDIREQIKLLQNQLRRGKLYIEKHDEVLRIQLFSFLHDFENGKIPDSGKMKEFFVERLEIKTANNCRAEIEHLEEQIVNHDGDIETTISVLSGFVALTRYSRFLLFGFHGEELESSDRNQKMRNRLIKQETVETLVTIPKDFCCPISLELMTDPVIIATGQTYDRCSIARWIEEGHCNCPKTGQMLVHNNLVPNRALRNLIMQWCSAHGVAYDPPEGMDSSAEKLAAASSYRAAVEANRATTQLLIQQLANGSQEGKTIAVQEIRLLAKTGKENRAFIAEAGAIPHLLNLLSSPNHVAQENSITAILNLSIYDKNKSQIMEEEGCLRLIVRVLKLGGLTSMMRGGTARGKENAVAALLELCRTGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARMFQRCENITLHYSELGVGYAFSSNSAAGRESSFVGDMSAVSIPISVPVL 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11504151 11506300 - Bda026104.1 Bda07g00963 9853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g00963 600 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Bda07g00963 600 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 485 - -
Bda07g00963 600 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 486 578 - -
Bda07g00963 600 SUPERFAMILY ARM repeat 390 550 IPR016024 -
Bda07g00963 600 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Bda07g00963 600 Gene3D - 358 560 IPR011989 -
Bda07g00963 600 PANTHER U BOX DOMAIN-CONTAINING 12 485 - -
Bda07g00963 600 CDD RING-Ubox_PUB 291 333 IPR045210 -
Bda07g00963 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 357 IPR013083 -
Bda07g00963 600 PANTHER U BOX DOMAIN-CONTAINING 486 578 - -
Bda07g00963 600 Coils Coil 212 232 - -
Bda07g00963 600 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Bda07g00963 600 SUPERFAMILY RING/U-box 278 361 - -
Bda07g00963 600 SMART arm_5 462 511 IPR000225 GO:0005515
Bda07g00963 600 SMART arm_5 420 460 IPR000225 GO:0005515
Bda07g00963 600 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Bda07g00963 600 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00060 Bda-Chr1:11196588 Bda07g00963 Bda-Chr7:11504151 6.46E-10 dispersed
Bda07g00963 Bda-Chr7:11504151 Bda07g00590 Bda-Chr7:7230889 1.56E-07 dispersed
Bda07g00963 Bda-Chr7:11504151 Bda15g00313 Bda-Chr15:5969027 8.62E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g00963 - - mnt:21388341 682.174