Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01009 ATGGGCAGTACGAAGTTTGCGAATTGCATAAGGTTCTTTGTTGGGATTCTGTTGATCTCCACGCCGCCGTTTTGTTTTGGGGATACTGATCCTCGTGATGTTGCAGCAATCAACGCCCTGTTCGTTGCTCTTGGCTACCCGCCTCTTCCAGGGTGGCTTCTTGTTGGTGGGGATCCTTGTGGACAGAAGTGGACAGGCGTTGACTGTGTTTTCTCGAACATAACGGCAATTCGACTCAGCGGTGCAAATTTGGGAGGCGAGCTCGGTGATAGCTTAGAATTCTTCGAGTCCATTATTTCAATTGATTTTAGCAACAATCATATCAGTGGGCCTATTCCACCTGCGTTGCCTCAGACTCTAAGGAACTTTTCTCTCTCTTCTAACCAGTTCAGTGGAACCATCCCATCGACCTTATCCTCTCTGTCTCAGTTACTCGATTTGTCGTTGAATAAGAACCTCCTAAGTGGTGAATTACCTGATGCCTTTCAGCAGCTTACTAGTTTGATACATTTAGACATTTCCGATAATGGTTTAAATGGTCAGCTGCCTGCATCGCTAGGGAATTTGTTATCTCTGAACACGTTACACTTGCAAAACAATCAACTTTCTGGAACACTTGATGTTCTGCAAGATCTTCCCCTTGCCGATTTGAATATAGAAAATAATTTATTTTCCGGGCCGATACCTGTAAAATTGCTGGCCATTCCAAACTTCAGAAAAGATGGCAATCCTTTCAATACAAGCATCATTCTACCTCCTCCTGCATCCGCTCCAGCTCCAGCCTCATTCCCTTTTTCCGGAGCACCATCTTCAGAGGGATCATCAGGAGGACGGGCAAATGCACCATCTGGCTCTGAAACTTACGCGTCGAACAAACCTTCAAAATTTTTCACTGCTAAAAGAATCACTTTGCTTGCTATTATAGGGATAGCAATAATAATTTTATTAGGATTCTTGCTTATTTTGTCAAGATGCTTGAGAAATAAAAAAGAAAAAAACCATAGTGATGCTGCATTTGCGGGTTCTAGAGAAAGGTCCAACTTCGGCGAATCATCAGTTCTGCAAATAAATTTAGAAAGAGCAGTTCCAAAGGAGAGTGCTTTAAATTCACGAGATAGATTTGAAATCGACAATAAATTAACTGGTTTTACTCCAAATCCGCAAAAGACGCGAGATGTGACAAGAGCAACTGCAGTTGGTTCGTCGCGACACAAAGAACATGGGTCGGACTCGTCTGACATGAGTGGAGTTTTCCTGCTTACAAGTAGACGGCCGACTAAGACTCTAAATCCTTATTCTGTTAAAGTTTTCTCCATTGCAACGCTTCAGCAGTTTACCGATAGTTTCTCCCAAGAAAATTTTGTTGGAATTGGAATGCTTGGTAGTGTTTATAAGGCTGAACTTCCTAGTGGAAAGATGTTGGCGGTCAAGAAATTGTCCATAGACGCTTCTAAGTTGCAGAGTGATGAGGAATTTCTGGAAATGGTATCGAATATGTCAAAGATTCGACATAATCACGTAGTGGGGCTCGTGGGTTATTGTTCTGAGCATGGCCAACGGCTGGTTGTGCATGAATATTGCAAAAATGGGACACTTTACGATGGACTTCATGTGTACGAAGAGATCCATCGGAGACTTTCTTGGAAAATGCGTATCAGGGTGGCACTGGGGGCCGCAAGAGCGCTAGAGTATTTGCACGAGGGGTGTCAACCACCTATAGTGCACAAGAATTTCAAGTCTGCTAATCTTCTCTTCGATGACGAGCTTAAAGTTTACGTATCAGACTGTGGGTTAGCACCTCTACTATCATCCGGTTTGGCGAGTCTGTCTTTGGGTCGAATACTCATGTCTTCCGGCTACGGAGCCCCTGAGTTTGAGTCGGGAAGTTACTCTTGCAAAAGTGATGTATATAGCTTTGGAGTTGTAATGTTGGAGCTCCTCACTGGTCGTAACTCCTGTGATCGGTCAAGACCTCGAGGGGAACAATTTTTGGTTAGATGGGCCGTTCCCCAGCTCCACGATATTGATGCACTGTCGAGAATGGTCGATCCGTCTCTAAACTGCGTTTATCCCATCAAGTCGTTGTCTCGTTTTGCTGATATAATCTCCTTATGTGTACAGGTGCTGCTTCTGGGTATTCTCAGAATCTTAATTTTGTGCAAAAGTCTATATATTAAAGTTTTGAACTTTCTTCCCATTTTTTTTCCAGCACGAGCCGGAATTCAGGCCGCCGATGTCGGAAATTGTGCAGGAACTCTTGCAAATGACTTGAGAGGGTAG 2280 43.77 MGSTKFANCIRFFVGILLISTPPFCFGDTDPRDVAAINALFVALGYPPLPGWLLVGGDPCGQKWTGVDCVFSNITAIRLSGANLGGELGDSLEFFESIISIDFSNNHISGPIPPALPQTLRNFSLSSNQFSGTIPSTLSSLSQLLDLSLNKNLLSGELPDAFQQLTSLIHLDISDNGLNGQLPASLGNLLSLNTLHLQNNQLSGTLDVLQDLPLADLNIENNLFSGPIPVKLLAIPNFRKDGNPFNTSIILPPPASAPAPASFPFSGAPSSEGSSGGRANAPSGSETYASNKPSKFFTAKRITLLAIIGIAIIILLGFLLILSRCLRNKKEKNHSDAAFAGSRERSNFGESSVLQINLERAVPKESALNSRDRFEIDNKLTGFTPNPQKTRDVTRATAVGSSRHKEHGSDSSDMSGVFLLTSRRPTKTLNPYSVKVFSIATLQQFTDSFSQENFVGIGMLGSVYKAELPSGKMLAVKKLSIDASKLQSDEEFLEMVSNMSKIRHNHVVGLVGYCSEHGQRLVVHEYCKNGTLYDGLHVYEEIHRRLSWKMRIRVALGAARALEYLHEGCQPPIVHKNFKSANLLFDDELKVYVSDCGLAPLLSSGLASLSLGRILMSSGYGAPEFESGSYSCKSDVYSFGVVMLELLTGRNSCDRSRPRGEQFLVRWAVPQLHDIDALSRMVDPSLNCVYPIKSLSRFADIISLCVQVLLLGILRILILCKSLYIKVLNFLPIFFPARAGIQAADVGNCAGTLANDLRG 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11865319 11869648 + Bda026155.1 Bda07g01009 9899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01009 759 SUPERFAMILY Protein kinase-like (PK-like) 427 707 IPR011009 -
Bda07g01009 759 Gene3D Phosphorylase Kinase; domain 1 419 526 - -
Bda07g01009 759 MobiDBLite consensus disorder prediction 261 290 - -
Bda07g01009 759 MobiDBLite consensus disorder prediction 267 290 - -
Bda07g01009 759 PANTHER LEUCINE RICH REPEAT KINASE 2 8 350 - -
Bda07g01009 759 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 350 - -
Bda07g01009 759 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Bda07g01009 759 MobiDBLite consensus disorder prediction 381 397 - -
Bda07g01009 759 Gene3D Ribonuclease Inhibitor 46 249 IPR032675 -
Bda07g01009 759 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 425 707 - -
Bda07g01009 759 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Bda07g01009 759 Pfam Protein tyrosine and serine/threonine kinase 453 652 IPR001245 GO:0004672|GO:0006468
Bda07g01009 759 PANTHER LEUCINE RICH REPEAT KINASE 2 425 707 - -
Bda07g01009 759 Gene3D Transferase(Phosphotransferase) domain 1 527 709 - -
Bda07g01009 759 MobiDBLite consensus disorder prediction 379 410 - -
Bda07g01009 759 SUPERFAMILY L domain-like 31 237 - -
Bda07g01009 759 ProSiteProfiles Protein kinase domain profile. 449 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01009 - - - jre:108992598 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01009 Bda-Chr7:11865319 Bda13g00653 Bda-Chr13:7491609 1.15E-170 dispersed
Bda09g01596 Bda-Chr9:47377168 Bda07g01009 Bda-Chr7:11865319 1.02E-155 dispersed
Bda07g01009 Bda-Chr7:11865319 Bda06g00321 Bda-Chr6:5260118 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda09g01596 . 407 700 Strubbelig Receptor Gene Family AT1G11130 54.2 5.0e-86 315.8
Bda02g00925 . 353 647 Strubbelig Receptor Gene Family AT1G11130 51.2 1.9e-80 297.4
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda09g01596 . 50 723 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-144 510.8
Bda09g01596 . 226 730 Strubbelig Receptor Gene Family AT4G22130 69.7 2.1e-175 612.5
Bda02g00925 . 136 677 Strubbelig Receptor Gene Family AT4G22130 59.6 1.6e-162 569.7
Bda13g00653 . 255 560 Strubbelig Receptor Gene Family AT4G22130 58.0 7.2e-99 358.2
Bda07g01009 . 431 707 Strubbelig Receptor Gene Family AT4G22130 59.0 4.0e-89 325.9
Bda06g00321 . 429 686 Strubbelig Receptor Gene Family AT4G22130 59.8 1.8e-86 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69721 PF07714 PK_Tyr_Ser-Thr 1.10E-32 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01009 Bda_Chr07 FPKM 2.596296 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0