Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01033 GAAGCGTATGATGCACTTGATCCAAATGGAAACATCACTATCAAATGGGATATTATCAGTTGGACTGCTGATGGCTATGTTGCTACGGTGACAATATACAATTTTCAGCAATATCGCCACATTCAAGCACCGGGTTGGGCGCTGGGATGGACGTGGGCGAAGAAGGAGGTAATCTGGAGTATGGTGGGAGGTCAGGCTACCGACCAAGGAGATTGCTCGAGATTTAAGGGAAATATTCCACACTGCTGCAAAAAGGCCCCAACTATTGTCGATCTTCTGCCGGGAACTCCTTACAATCAACAAGTAGCAAATTGTTGTAAAGGTGGAGTACTCTCCTCGTGGGTCCAAGATCCAGCCAATGCAGCTAGCTCGTTTCAGATCAGTGTCGGTTCTTCGGGAACCACCAATAAGACAGTGAGAGTGCCTAAGAACTTCACTTTGCAAGCGCCAGGGCCTGGTTATACTTGTGGACCTGGAAAGATAGTTAAACCAACTAAATTTATGTCTGCAGATAACAGAAGAGTCACACAAGCGTTGATGACATGGAATGTAACCTGCACATATTCGCAATTTCTGGCCCAGAGAACTCCTACTTGTTGTGTCTCATTTTCATCTTTCTACAATTCTACAATTGTTCCCTGTCCGACATGTTCCTGTGGCTGCCAAAGTAATCTGAGCGAATCAGGGGGCTGTATCGGGGAAAATTCTTCATATTTAGCCTCGGTTGTTCAAGATTCTGGGCAAAATACTGCTCCTCTAGTTCAATGCACCAGCCATATGTGCCCAATTAGAGTTCATTGGCATGTCAAACTCAACTACAAAGAATACTGGCGGGTTAAGATTACCGTCACGAACTTCAACTACCGGATGAACTATTCCAACTGGAATTTGGTTCTTCAACATCCCAACTTCGACAATCTGACCCAGATTTTCAGTTTCAACTATGAATCACTAAATCCTTATACAACAATAAATGATACTGGAATGCTGTGGGGAATCAAGTTTTACAATGATTTTCTCATGGAAGCAGGCCCTCTCGGCAATGTGCAATCGGAGCTACTCTTTCGTAAAGATTCAACCTTTACCTTCGACAAAGGCTGGGCTTTTCCTCGAAGGGTTTATTTTAACGGCGATAACTGTGTCATGCCGCCTCCGGATGCCTATCCATGGCTACCAAATGCCAGTTCCGGCCTTGAAATTTCTTTTGTTACCTCTCTATTGACTTTTGTTTGTGCGTTGATAGTCATGTACTTTACC 1257 44.23 EAYDALDPNGNITIKWDIISWTADGYVATVTIYNFQQYRHIQAPGWALGWTWAKKEVIWSMVGGQATDQGDCSRFKGNIPHCCKKAPTIVDLLPGTPYNQQVANCCKGGVLSSWVQDPANAASSFQISVGSSGTTNKTVRVPKNFTLQAPGPGYTCGPGKIVKPTKFMSADNRRVTQALMTWNVTCTYSQFLAQRTPTCCVSFSSFYNSTIVPCPTCSCGCQSNLSESGGCIGENSSYLASVVQDSGQNTAPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITVTNFNYRMNYSNWNLVLQHPNFDNLTQIFSFNYESLNPYTTINDTGMLWGIKFYNDFLMEAGPLGNVQSELLFRKDSTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPWLPNASSGLEISFVTSLLTFVCALIVMYFT 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12187795 12189992 - Bda033885 Bda07g01033 9923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01033 419 PANTHER PROTEIN COBRA 1 417 IPR006918 GO:0010215|GO:0031225
Bda07g01033 419 Pfam COBRA-like protein 26 189 IPR006918 GO:0010215|GO:0031225
Bda07g01033 419 PIRSF COBRA 1 419 IPR006918 GO:0010215|GO:0031225
Bda07g01033 419 PANTHER COBRA-LIKE PROTEIN 1 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01033 - - - nnu:104599627 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00513 Bda-Chr6:7367811 Bda07g01033 Bda-Chr7:12187795 0 dispersed
Bda07g01033 Bda-Chr7:12187795 Bda12g00205 Bda-Chr12:2018623 0 dispersed
Bda12g00203 Bda-Chr12:2010972 Bda07g01033 Bda-Chr7:12187795 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1006 . Blo11g00321 . . . . . . . Cmo01g00448 Cma01g00420 . . . . Cpe03g00975 . . . . . . . . . . . . . . . Cone11ag0355 . Cone2ag0494 . . . . Cme07g01006 . . Bda07g01033 . . . . . Sed06g0869 . . . . . . Cpe02g01399 . Bhi01g02252 Tan04g1899 Cmetu07g0296 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00513 . 21 410 COBRA Gene Family AT5G60920 82.0 2.1e-209 724.9
Bda07g01033 . 14 407 COBRA Gene Family AT5G60920 76.6 2.9e-198 688.0
Bda12g00205 . 37 434 COBRA Gene Family AT5G60920 67.2 1.8e-176 615.5
Bda12g00203 . 48 327 COBRA Gene Family AT5G60920 74.6 2.6e-138 488.8
Bda15g00631 BCT 267 499 COBRA Gene Family AT5G60920 61.3 3.8e-89 325.5
Bda06g00512 BCT,CCT 43 219 COBRA Gene Family AT5G60920 67.2 1.5e-74 276.9
Bda06g00513 . 7 422 COBRA Gene Family AT3G02210 74.9 6.2e-202 700.3
Bda07g01033 . 1 417 COBRA Gene Family AT3G02210 73.3 1.1e-198 689.5
Bda12g00205 . 2 433 COBRA Gene Family AT3G02210 62.8 1.7e-175 612.5
Bda12g00203 . 11 327 COBRA Gene Family AT3G02210 73.1 4.1e-145 511.5
Bda15g00631 BCT 256 484 COBRA Gene Family AT3G02210 59.8 4.0e-84 308.9
Bda06g00512 BCT,CCT 15 219 COBRA Gene Family AT3G02210 61.5 3.4e-75 279.3
Bda07g01033 . 1 416 COBRA Gene Family AT3G29810 75.4 1.7e-199 692.2
Bda06g00513 . 4 408 COBRA Gene Family AT3G29810 74.9 3.2e-195 677.9
Bda12g00205 . 18 416 COBRA Gene Family AT3G29810 66.2 9.1e-174 606.7
Bda12g00203 . 30 327 COBRA Gene Family AT3G29810 72.9 8.6e-140 493.8
Bda15g00631 BCT 267 480 COBRA Gene Family AT3G29810 63.9 1.0e-84 310.8
Bda06g00512 BCT,CCT 13 219 COBRA Gene Family AT3G29810 61.1 2.1e-77 286.6
Bda12g00205 . 23 345 COBRA Gene Family AT5G15630 85.1 2.8e-178 621.3
Bda06g00513 . 7 331 COBRA Gene Family AT5G15630 72.8 3.9e-148 521.2
Bda07g01033 . 2 325 COBRA Gene Family AT5G15630 68.3 2.2e-143 505.4
Bda12g00203 . 31 327 COBRA Gene Family AT5G15630 68.1 2.0e-128 455.7
Bda06g00512 BCT,CCT 28 219 COBRA Gene Family AT5G15630 68.2 5.4e-81 298.1
Bda15g00631 BCT 267 408 COBRA Gene Family AT5G15630 81.8 3.0e-71 265.8
Bda06g00513 . 17 197 COBRA Gene Family AT5G60950 59.1 7.5e-62 233.8
Bda07g01033 . 4 190 COBRA Gene Family AT5G60950 56.9 1.3e-61 233.0
Bda12g00203 . 19 224 COBRA Gene Family AT5G60950 53.9 3.7e-61 231.5
Bda06g00512 BCT,CCT 1 219 COBRA Gene Family AT5G60950 53.0 9.1e-60 226.9
Bda12g00205 . 15 213 COBRA Gene Family AT5G60950 54.0 1.2e-56 216.5
Bda07g01033 . 1 395 COBRA Gene Family AT1G09790 54.4 1.0e-132 470.3
Bda06g00513 . 5 402 COBRA Gene Family AT1G09790 53.6 6.6e-132 467.6
Bda12g00205 . 25 416 COBRA Gene Family AT1G09790 52.4 2.4e-129 459.1
Bda12g00203 . 32 327 COBRA Gene Family AT1G09790 51.0 5.3e-89 325.1
Bda15g00631 BCT 268 479 COBRA Gene Family AT1G09790 57.5 1.3e-74 277.3
Bda08g00305 BCT 31 628 COBRA Gene Family AT4G16120 67.3 1.1e-255 879.4
Bda03g01159 BCT 33 626 COBRA Gene Family AT4G16120 64.3 1.5e-244 842.4
Bda12g00896 . 54 650 COBRA Gene Family AT4G16120 56.1 2.5e-212 735.3
Bda08g00305 BCT 9 647 COBRA Gene Family AT3G16860 62.0 4.1e-239 824.3
Bda03g01159 BCT 11 639 COBRA Gene Family AT3G16860 60.6 2.0e-233 805.4
Bda12g00896 . 51 664 COBRA Gene Family AT3G16860 52.8 1.2e-201 699.9
Bda08g00305 BCT 24 647 COBRA Gene Family AT5G49270 60.6 5.1e-237 817.4
Bda03g01159 BCT 1 625 COBRA Gene Family AT5G49270 58.2 6.3e-227 783.9
Bda12g00896 . 50 669 COBRA Gene Family AT5G49270 52.3 3.1e-202 701.8
Bda12g00896 . 22 650 COBRA Gene Family AT3G20580 64.6 2.0e-257 885.2
Bda08g00305 BCT 27 628 COBRA Gene Family AT3G20580 54.8 2.0e-204 709.1
Bda03g01159 BCT 29 626 COBRA Gene Family AT3G20580 53.0 5.2e-197 684.5
Bda12g00896 . 25 673 COBRA Gene Family AT4G27110 60.6 3.8e-240 827.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01033 Bda_Chr07 FPKM 8.946191 7.858708 2.1308 2.194351 5.793685 6.902625 5.322967 5.517128 5.015097