Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01078 ATGTCACCGGTTGATTCTTCACGCGAGGAGTATGTTTACTATGCAAAGTTGGCCGAACAGGCTGAACGGTATGAAGAAATGGTTGAGTTCATGGAGAAAGTTGTAAAGATAGTGGATACTGAGGAGCTTACTGGGGAGGAAAGGAATCTTCTCTCAGTGGCTTACAAGAATGTGATTGGGGCTAGGAGGGCCTCATGGAGGATTATATCCTCCATTGAACAGAAGGAGGAGAGTAGGGGAAATGAGGATCATGTTGCACTAATCAAGGAGTACCGAGGCAAGATCGAAAGTGAACTGAGCAAGATATGTGATGGGATATTGAAACTTCTCGATTCTCATCTTATCCCCTCAGCCTCAACTGCTGAATGTAAGGTGTTTTATCTAAAAATGAAGGGAGATTACCACAGGTACCTTGCTGAGTTTAAGTCTGGAGCCGAGAGGAAAGAAGCTGCTGAGAGCACTTTGTTGGCTTACAAGTCTGCTCAGGACATTGCTCTTGCTGAACTAGCTCCTACACACCCGATAAGGCTTGGACTTGCACTTAACTTCTCAGTATTCTACTATGAAATTCTTAACTCTCCAGATCGTGCATGCAATCTTGCGAAGCAGTTATTTACATGGGGTTGGAATCAAAGAGGAACACTAGGACACCCACCAGAGACAAAAACTGAAAACATTCCAAGCCAGGTTAAAGCTCTTTCAAGCGTTAAAATCGTCCAGGCAGCTATAGGAGGGTGGCATTGTTTGGCTGTGGATGATCAAGGCCGAGCATATGCATGGGGTGGAAATGAGTATGGCCAATGTGGTGAAGAACCTGGAAGGAAAGATGACACTGGTAGGCTAATCAGGAGAGATATCGTGATTCCTCAACGATGTGCGCCAATGCTTGTTGTTCGCCAGGTAGCCGCAGGAGGTACACACTCTGTAGTACTTACACGAGAAGGGCGTGTATGGACATGGGGTCAACCGTGGCCCCCTGGTTACATAAAACAAATCTCCGTCCCTGTTCGCGTGCAAGGTCTTGACAATGTGAAGCTCATTGCAGTTGGGGCATTTCATAATTTGGCTCTTCAAGAGGATGGAACTTTATGGGCGTGGGGTAACAATGAATATGGACAACTTGGGACGGGAGATACCCAACCAAGGTCGCAGCCTATTCGTGTTCAAGGGCTTTCTGGTCTTACTTTGGTTGATATTGCTGCTGGAGGGTGGCATTCTACTGCATTGACAGATAATGGCGAGGTTTACGGCTGGGGAAGAGGAGAGCATGGGAGACTTGGATTTGGAGATAATGATAAGAGCAGTAAAATGGTTCCTCAAAGGGTTCAACTTCTGGCCGGGGAAGACATTGTCCAGGTGTCTTGTGGGGGTACACATTCTGTCGCACTAACTCGTGATGGTCACATGTTCTCGTTCGGGCGAGGTGACCATGGGCGACTCGGGAATGGGAGGAATGTGACAACGGGTCAGCCAATGGAAGTGCCCATCAAGAATATCCCAGCAAGAAGTGGAGGGGATGGAAATTGGACTGCTAAACTAGTTGCTTGTGGTGGGCGCCATACTTTAGCTATCCTTGAGGGCAAGTGA 1587 47.45 MSPVDSSREEYVYYAKLAEQAERYEEMVEFMEKVVKIVDTEELTGEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVALIKEYRGKIESELSKICDGILKLLDSHLIPSASTAECKVFYLKMKGDYHRYLAEFKSGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQLFTWGWNQRGTLGHPPETKTENIPSQVKALSSVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPGRKDDTGRLIRRDIVIPQRCAPMLVVRQVAAGGTHSVVLTREGRVWTWGQPWPPGYIKQISVPVRVQGLDNVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIRVQGLSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVQLLAGEDIVQVSCGGTHSVALTRDGHMFSFGRGDHGRLGNGRNVTTGQPMEVPIKNIPARSGGDGNWTAKLVACGGRHTLAILEGK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12622014 12629770 - Bda026231.2 Bda07g01078 9968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01078 528 Gene3D - 325 528 IPR009091 -
Bda07g01078 528 Pfam Regulator of chromosome condensation (RCC1) repeat 466 524 IPR000408 -
Bda07g01078 528 Pfam Regulator of chromosome condensation (RCC1) repeat 255 311 IPR000408 -
Bda07g01078 528 Pfam Regulator of chromosome condensation (RCC1) repeat 412 463 IPR000408 -
Bda07g01078 528 Pfam Regulator of chromosome condensation (RCC1) repeat 203 251 IPR000408 -
Bda07g01078 528 Pfam Regulator of chromosome condensation (RCC1) repeat 360 409 IPR000408 -
Bda07g01078 528 SUPERFAMILY 14-3-3 protein 7 215 IPR036815 -
Bda07g01078 528 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 254 IPR000408 -
Bda07g01078 528 Gene3D - 2 226 IPR036815 -
Bda07g01078 528 SMART 1433_4 8 240 IPR023410 -
Bda07g01078 528 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 202 528 - -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 412 IPR000408 -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 255 314 IPR000408 -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 527 IPR000408 -
Bda07g01078 528 SUPERFAMILY RCC1/BLIP-II 204 495 IPR009091 -
Bda07g01078 528 PANTHER BNAC01G28130D PROTEIN 202 528 - -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 466 IPR000408 -
Bda07g01078 528 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 514 524 IPR000408 -
Bda07g01078 528 Coils Coil 14 34 - -
Bda07g01078 528 Pfam 14-3-3 protein 15 206 IPR023410 -
Bda07g01078 528 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Bda07g01078 528 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Bda07g01078 528 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Bda07g01078 528 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Bda07g01078 528 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Bda07g01078 528 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 360 IPR000408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01078 Bda-Chr7:12622014 Bda13g01756 Bda-Chr13:40903858 1.78E-128 dispersed
Bda07g01078 Bda-Chr7:12622014 Bda01g01183 Bda-Chr1:47114550 1.75E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01078 - - cit:102618063 619.002