Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda07g01091 | ATGGCACTGGCCAAAGAACCACGGATGGGCTTAGTTCAAACTCCAGACCTTTCTTCCCAAATCTCTTATGAAATTGCACAAGAAATGGGAAAAAATGGTGGGTTTGCAAAGAATACTGGTTTTTTGTTCTGCAGTTCAAACTATCAACCTGATGTTTCTCACTCTGTAATAAACTTCAAGAACCAGCTTGATCAGAATCCAATCCATTTAAGCACTGATTCATCTTTGCTGAGTTTTGGTCAAACCCAACAATTAGCTCAAGATGATTATTTCAACTGGCCAGCAGAGGAAGAAAGCTTTGTCAATGGCTGTCAATGGAGTCAGATGATCAGTTCTCCTAGCTTACGCGTTTTGGAAGATTTGAACTGCTTCCAAAAAGCTTCTAACTTTACTCACATGGACAATCCTTCGAAAGAGAAGCAAAATGGATCAGATGGGTCTGGAAACAATTGGCTTTATTCTGAAGAATCGGATGTTATTGTTGAAGAAGAATCAAGAACATCTCATGAACAAACCCCCATAAACGGCCCCATTTGCGAGCAATCAATGAAGAAACAGTGCAATAATTCACCGAAGAAGACAACGCCAAAGACGAGTCCATCAAAGGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGAATTAGCGATCGATTGAAGACTCTTCAAGAACTAGTACCCAATGGCTCCAAGGTTGATTTGGTGACTATGCTGGAGAAAGCAATTAGCTACGTCAAATTCCTACAACTTCAAGTCAAGATTCTGGCTACTGATGACTTTTGGCCGGTTCAAGGAGGGAGAGCTCCTGATATTTCTCAAGTGAGGGAAGCCATTGATGCCATTCTTTCTTCTCAGAGAGACAGAAGCTCGAGCCCAAACAGTGCAATGCTTAGCAATGGAGGTTAA | 909 | 41.8 | MALAKEPRMGLVQTPDLSSQISYEIAQEMGKNGGFAKNTGFLFCSSNYQPDVSHSVINFKNQLDQNPIHLSTDSSLLSFGQTQQLAQDDYFNWPAEEESFVNGCQWSQMISSPSLRVLEDLNCFQKASNFTHMDNPSKEKQNGSDGSGNNWLYSEESDVIVEEESRTSHEQTPINGPICEQSMKKQCNNSPKKTTPKTSPSKDPQSIAAKNRRERISDRLKTLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDDFWPVQGGRAPDISQVREAIDAILSSQRDRSSSPNSAMLSNGG | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 12799053 | 12800448 | + | Bda026243.1 | Bda07g01091 | 9981 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda07g01091 | 302 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 200 | 249 | IPR011598 | GO:0046983 | |
| Bda07g01091 | 302 | MobiDBLite | consensus disorder prediction | 129 | 213 | - | - | |
| Bda07g01091 | 302 | Gene3D | - | 195 | 257 | IPR036638 | GO:0046983 | |
| Bda07g01091 | 302 | MobiDBLite | consensus disorder prediction | 129 | 154 | - | - | |
| Bda07g01091 | 302 | CDD | bHLH_AtIND_like | 201 | 263 | - | - | |
| Bda07g01091 | 302 | MobiDBLite | consensus disorder prediction | 170 | 206 | - | - | |
| Bda07g01091 | 302 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 200 | 258 | IPR036638 | GO:0046983 | |
| Bda07g01091 | 302 | Pfam | Helix-loop-helix DNA-binding domain | 207 | 250 | IPR011598 | GO:0046983 | |
| Bda07g01091 | 302 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 46 | 286 | - | - | |
| Bda07g01091 | 302 | SMART | finulus | 206 | 255 | IPR011598 | GO:0046983 | |
| Bda07g01091 | 302 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 46 | 286 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g01091 | Bda-Chr7:12799053 | Bda12g00192 | Bda-Chr12:1825543 | 2.04E-150 | dispersed | |
| Bda07g01091 | Bda-Chr7:12799053 | Bda01g01589 | Bda-Chr1:51739577 | 1.08E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16147 | PF00010 | HLH | 2.40E-08 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda07g01091 | - | - | tcc:18601899 | 242.662 |