Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda07g01141 | ATGGGGTCCTGCCTTTCTAGAGAAAGCAGGAGCACTATTCCTGGATCACCAAATTCTCTGGCAAGGAGAGCTAAGAAGAGAAAATCGTCGAAGAAAAGATTAAGATCACGTGGTTCTTCGTTTGACTATCGAAGGGAAGAACCTCTGCATAAAATCCCTGGGAGGATGTTCTTGAATGGGTCTAGTGAAGTTGCTTCTTTGTTCACTCAACAGGGTAGAAAAGGAACAAACCAAGATGCCATGATTGTTTGGGAGAATTTTGGTTTGAGAAGTGACACGATCTTCTGTGGAGTGTTTGACGGGCACGGAGAAAACCTTGTGATTGGAAATGTTGGAGATTCCAGAGCTGTAATGGCTACAAGAGATAAAGATGACACCCTTGTTGCCATTCAGTTGACCGTCGATCTGAAGCCGAATCTTCCCGGAGAAGAAGAGAGAATTCGCAGATGTAAAGGCCGGGTCTTTGCTCTTGAAGATGAACCAGAGGTTGCCAGAGTATGGCTGCCGACCAGCGACTCCCCCGGCCTTGCTATGGCTCGTGCATTTGGAGATTTTTGTCTCAAGGATTTTGGTCTAATATCTGTACCCGAAATAACCTGTCGACAACTAACCGAAAAGGATGAATTTGTCGTCATGGCGACGGATGGGATATGGGACGTTTTATCAAATTCAGAGGTAGTGGATATTGTAGCATCGGCCCAGTCTCGGTCGACCGCAGCTCGAGCTCTTGTTGAGGCAGCCGTTCGAGGATGGCAGTGTAAATATCCTACTTCCAAAGTCGATGATTGTGCTGTCGTGTGCCTATTCATTGATTCGAACTCGAACAATCTATCAATGGCCTCCGATGCCAAAACCAAAGACTGTCTTTCCTTTGAGGCTCAAATTTGCAATGGCGATGCTGCCATTAGCGAGGACCTCTCTACGCCTGGCGATCTAAATCGCTTGGGCACAATACGAACGGTCAAAGACATTCTGGGTGAAGAGGAAGAAGAAGACTACGAGAATATGGCCGGGACTAGAAGTAAGTGGTCGGCCCTAGAAGGTGTGTCGAGAGTAAACTCGTTATTGACTTTGCCGAGATTTGTTCCGTTGAAGAAGGAGAAGGCCCGATAA | 1113 | 46.9 | MGSCLSRESRSTIPGSPNSLARRAKKRKSSKKRLRSRGSSFDYRREEPLHKIPGRMFLNGSSEVASLFTQQGRKGTNQDAMIVWENFGLRSDTIFCGVFDGHGENLVIGNVGDSRAVMATRDKDDTLVAIQLTVDLKPNLPGEEERIRRCKGRVFALEDEPEVARVWLPTSDSPGLAMARAFGDFCLKDFGLISVPEITCRQLTEKDEFVVMATDGIWDVLSNSEVVDIVASAQSRSTAARALVEAAVRGWQCKYPTSKVDDCAVVCLFIDSNSNNLSMASDAKTKDCLSFEAQICNGDAAISEDLSTPGDLNRLGTIRTVKDILGEEEEEDYENMAGTRSKWSALEGVSRVNSLLTLPRFVPLKKEKAR | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 13531687 | 13534091 | - | Bda026304.1 | Bda07g01141 | 10031 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda07g01141 | 370 | SMART | PP2C_4 | 53 | 268 | IPR001932 | - | |
| Bda07g01141 | 370 | PANTHER | PROTEIN PHOSPHATASE 2C 33-RELATED | 1 | 104 | - | - | |
| Bda07g01141 | 370 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 104 | - | - | |
| Bda07g01141 | 370 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Bda07g01141 | 370 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Bda07g01141 | 370 | Gene3D | - | 58 | 104 | IPR036457 | - | |
| Bda07g01141 | 370 | SUPERFAMILY | PP2C-like | 62 | 271 | IPR036457 | - | |
| Bda07g01141 | 370 | CDD | PP2Cc | 64 | 270 | IPR001932 | - | |
| Bda07g01141 | 370 | PANTHER | PROTEIN PHOSPHATASE 2C 33-RELATED | 103 | 355 | - | - | |
| Bda07g01141 | 370 | Pfam | Protein phosphatase 2C | 103 | 248 | IPR001932 | - | |
| Bda07g01141 | 370 | Gene3D | - | 105 | 278 | IPR036457 | - | |
| Bda07g01141 | 370 | PANTHER | ALPHABET, ISOFORM E-RELATED | 103 | 355 | - | - | |
| Bda07g01141 | 370 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 270 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g01141 | Bda-Chr7:13531687 | Bda13g00655 | Bda-Chr13:7507597 | 4.12E-14 | dispersed | |
| Bda12g00309 | Bda-Chr12:3395056 | Bda07g01141 | Bda-Chr7:13531687 | 9.28E-46 | wgd | |
| Bda13g01843 | Bda-Chr13:42548903 | Bda07g01141 | Bda-Chr7:13531687 | 1.60E-38 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda07g01141 | - | - | twl:119990449 | 350.517 |