Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01144 ATGGAGTTCGATTCCGGAATTCCTTTGCCCCGAGCGGCAGTGACGGAAGGGCCTTCCTCAGCTCTGTCGCCGTCGTTGAGCGAAGGGGTAATATGGGGGTGTTACAATATTACAGATGCGTTGTGGCAAATGAATTTGAGATCAAGCGAATCGATGGAAACTGGGTCATATCCTGAGCGTCCAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCCTATGTAGATTTGGAGCAACTTGCCGTTTTAACCATCCTCCCGACAGAAAGCTGGCGATTGCCACTGCAAGGATGAAGGGGGAATATCCGGAGAGATTTGGACAGCCGGAATATTTGTATATGAATTCTCTTCAGTACTACCTGAAGACCGCAACCTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTCGAGACAAGGCCGGGATTGCTGGAAGAGTTTCCTTAAACGTCTTAGGATATCCGCTTCGCCCGAACGAGATCGAATGCGCATATTATTTACGAACTGGACTGTGCAAATTCGGGAGTACCTGCAAATTCCATCACCCTCAACCGACGAACATGATGGTTTCCTTACATGGGTCTCCTGTTTATCCGGCCATCCAATCTCCGACTACTAGTCAGCCGTCGTATCAGGGAGGAATTACGAATTGGTCCAGAGCATCTTTCATTCCGACTCCGAGAGGGCAGGGCCCTTCTAGTTATGCACCAGTTATTCTTCCTCAGGGACTGGTTTCAGTTCAAGGTTGGAATGCATACAGTGGTACTTTGGGATCAGTCTCTGCATCGGAGAATCAGCAGCCATCGGCAGCGAATAGTCAAGTTTACGGAGTTTTACGTCAGAATGAATCTGCTAGTGTAGGATCTGAAGTATCGTTTTCTCCGTTTCGCGCGAGCTCTGTTCCTGTTGGGTACTATGCATTGCAGAGGGATAATGTATTTCCCGAGAGACCTGGCCAGCCCGAGTGTCAGTTTTACATGAAAACTGGTGACTGCAAATTTGGCGTTGTTTGTAGATTCCATCATCCGAGAGAGAGATTAATACCGGCTCCGGATTGTGTTTTGAGCCCCCTCGGCCTTCCCTTGCGTCCGCTTATGTTGTTCGACATTGGACAGGGGGAACCTTTATGCCTGTTCTATTCTCGATATGGTATCTGCAAGTTTGGCCCGAGCTGCAAATTCGACCATCCAATGGGTATCTTCTCACACAATCTCTCTGCATCGCAGTCGTCGGATTATCCGGCTCGTCGCTTATTAGTTTCATCACCTGGAGCATCAGGTCTAAATTTGTCACCTGAAGGATTGATCGAAGGAGGCCATACGCAGCCAAGGAGACTTTCACTTTCAGAGACAAGACAGATGTCTTCTAGCGGTGATCGTATCGACCCGGACGGGTGA 1398 48.78 MEFDSGIPLPRAAVTEGPSSALSPSLSEGVIWGCYNITDALWQMNLRSSESMETGSYPERPGEPDCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERFGQPEYLYMNSLQYYLKTATCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGLCKFGSTCKFHHPQPTNMMVSLHGSPVYPAIQSPTTSQPSYQGGITNWSRASFIPTPRGQGPSSYAPVILPQGLVSVQGWNAYSGTLGSVSASENQQPSAANSQVYGVLRQNESASVGSEVSFSPFRASSVPVGYYALQRDNVFPERPGQPECQFYMKTGDCKFGVVCRFHHPRERLIPAPDCVLSPLGLPLRPLMLFDIGQGEPLCLFYSRYGICKFGPSCKFDHPMGIFSHNLSASQSSDYPARRLLVSSPGASGLNLSPEGLIEGGHTQPRRLSLSETRQMSSSGDRIDPDG 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13579028 13581818 + Bda026307.3 Bda07g01144 10034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01144 465 ProSiteProfiles Zinc finger C3H1-type profile. 60 88 IPR000571 GO:0046872
Bda07g01144 465 SUPERFAMILY CCCH zinc finger 375 398 IPR036855 GO:0046872
Bda07g01144 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 87 IPR000571 GO:0046872
Bda07g01144 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 373 398 IPR000571 GO:0046872
Bda07g01144 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 162 184 IPR000571 GO:0046872
Bda07g01144 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 319 344 IPR000571 GO:0046872
Bda07g01144 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 118 138 IPR000571 GO:0046872
Bda07g01144 465 ProSiteProfiles Zinc finger C3H1-type profile. 157 185 IPR000571 GO:0046872
Bda07g01144 465 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Bda07g01144 465 Gene3D - 309 400 - -
Bda07g01144 465 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Bda07g01144 465 ProSiteProfiles Zinc finger C3H1-type profile. 118 139 IPR000571 GO:0046872
Bda07g01144 465 PANTHER PROTEIN PHOSPHATASE RELATED 38 463 - -
Bda07g01144 465 Gene3D - 144 192 - -
Bda07g01144 465 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Bda07g01144 465 SMART c3hfinal6 157 184 IPR000571 GO:0046872
Bda07g01144 465 SMART c3hfinal6 115 138 IPR000571 GO:0046872
Bda07g01144 465 SMART c3hfinal6 60 87 IPR000571 GO:0046872
Bda07g01144 465 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Bda07g01144 465 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Bda07g01144 465 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 38 463 - -
Bda07g01144 465 Gene3D - 58 143 - -
Bda07g01144 465 SUPERFAMILY CCCH zinc finger 160 185 IPR036855 GO:0046872
Bda07g01144 465 SUPERFAMILY CCCH zinc finger 321 347 IPR036855 GO:0046872
Bda07g01144 465 MobiDBLite consensus disorder prediction 430 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01144 Bda-Chr7:13579028 Bda12g00047 Bda-Chr12:290653 2.96E-113 dispersed
Bda12g00306 Bda-Chr12:3373031 Bda07g01144 Bda-Chr7:13579028 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16151 PF00642 zf-CCCH 2.10E-09 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01144 - - qsu:112012560 723.391