Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda07g01144 | ATGGAGTTCGATTCCGGAATTCCTTTGCCCCGAGCGGCAGTGACGGAAGGGCCTTCCTCAGCTCTGTCGCCGTCGTTGAGCGAAGGGGTAATATGGGGGTGTTACAATATTACAGATGCGTTGTGGCAAATGAATTTGAGATCAAGCGAATCGATGGAAACTGGGTCATATCCTGAGCGTCCAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCCTATGTAGATTTGGAGCAACTTGCCGTTTTAACCATCCTCCCGACAGAAAGCTGGCGATTGCCACTGCAAGGATGAAGGGGGAATATCCGGAGAGATTTGGACAGCCGGAATATTTGTATATGAATTCTCTTCAGTACTACCTGAAGACCGCAACCTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTCGAGACAAGGCCGGGATTGCTGGAAGAGTTTCCTTAAACGTCTTAGGATATCCGCTTCGCCCGAACGAGATCGAATGCGCATATTATTTACGAACTGGACTGTGCAAATTCGGGAGTACCTGCAAATTCCATCACCCTCAACCGACGAACATGATGGTTTCCTTACATGGGTCTCCTGTTTATCCGGCCATCCAATCTCCGACTACTAGTCAGCCGTCGTATCAGGGAGGAATTACGAATTGGTCCAGAGCATCTTTCATTCCGACTCCGAGAGGGCAGGGCCCTTCTAGTTATGCACCAGTTATTCTTCCTCAGGGACTGGTTTCAGTTCAAGGTTGGAATGCATACAGTGGTACTTTGGGATCAGTCTCTGCATCGGAGAATCAGCAGCCATCGGCAGCGAATAGTCAAGTTTACGGAGTTTTACGTCAGAATGAATCTGCTAGTGTAGGATCTGAAGTATCGTTTTCTCCGTTTCGCGCGAGCTCTGTTCCTGTTGGGTACTATGCATTGCAGAGGGATAATGTATTTCCCGAGAGACCTGGCCAGCCCGAGTGTCAGTTTTACATGAAAACTGGTGACTGCAAATTTGGCGTTGTTTGTAGATTCCATCATCCGAGAGAGAGATTAATACCGGCTCCGGATTGTGTTTTGAGCCCCCTCGGCCTTCCCTTGCGTCCGCTTATGTTGTTCGACATTGGACAGGGGGAACCTTTATGCCTGTTCTATTCTCGATATGGTATCTGCAAGTTTGGCCCGAGCTGCAAATTCGACCATCCAATGGGTATCTTCTCACACAATCTCTCTGCATCGCAGTCGTCGGATTATCCGGCTCGTCGCTTATTAGTTTCATCACCTGGAGCATCAGGTCTAAATTTGTCACCTGAAGGATTGATCGAAGGAGGCCATACGCAGCCAAGGAGACTTTCACTTTCAGAGACAAGACAGATGTCTTCTAGCGGTGATCGTATCGACCCGGACGGGTGA | 1398 | 48.78 | MEFDSGIPLPRAAVTEGPSSALSPSLSEGVIWGCYNITDALWQMNLRSSESMETGSYPERPGEPDCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERFGQPEYLYMNSLQYYLKTATCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGLCKFGSTCKFHHPQPTNMMVSLHGSPVYPAIQSPTTSQPSYQGGITNWSRASFIPTPRGQGPSSYAPVILPQGLVSVQGWNAYSGTLGSVSASENQQPSAANSQVYGVLRQNESASVGSEVSFSPFRASSVPVGYYALQRDNVFPERPGQPECQFYMKTGDCKFGVVCRFHHPRERLIPAPDCVLSPLGLPLRPLMLFDIGQGEPLCLFYSRYGICKFGPSCKFDHPMGIFSHNLSASQSSDYPARRLLVSSPGASGLNLSPEGLIEGGHTQPRRLSLSETRQMSSSGDRIDPDG | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 13579028 | 13581818 | + | Bda026307.3 | Bda07g01144 | 10034 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda07g01144 | 465 | ProSiteProfiles | Zinc finger C3H1-type profile. | 60 | 88 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SUPERFAMILY | CCCH zinc finger | 375 | 398 | IPR036855 | GO:0046872 | |
Bda07g01144 | 465 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 62 | 87 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 373 | 398 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 162 | 184 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 319 | 344 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 118 | 138 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | ProSiteProfiles | Zinc finger C3H1-type profile. | 157 | 185 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SUPERFAMILY | CCCH zinc finger | 65 | 88 | IPR036855 | GO:0046872 | |
Bda07g01144 | 465 | Gene3D | - | 309 | 400 | - | - | |
Bda07g01144 | 465 | ProSiteProfiles | Zinc finger C3H1-type profile. | 317 | 345 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | ProSiteProfiles | Zinc finger C3H1-type profile. | 118 | 139 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 463 | - | - | |
Bda07g01144 | 465 | Gene3D | - | 144 | 192 | - | - | |
Bda07g01144 | 465 | ProSiteProfiles | Zinc finger C3H1-type profile. | 371 | 399 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SMART | c3hfinal6 | 157 | 184 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SMART | c3hfinal6 | 115 | 138 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SMART | c3hfinal6 | 60 | 87 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SMART | c3hfinal6 | 371 | 398 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | SMART | c3hfinal6 | 317 | 344 | IPR000571 | GO:0046872 | |
Bda07g01144 | 465 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 38 | 463 | - | - | |
Bda07g01144 | 465 | Gene3D | - | 58 | 143 | - | - | |
Bda07g01144 | 465 | SUPERFAMILY | CCCH zinc finger | 160 | 185 | IPR036855 | GO:0046872 | |
Bda07g01144 | 465 | SUPERFAMILY | CCCH zinc finger | 321 | 347 | IPR036855 | GO:0046872 | |
Bda07g01144 | 465 | MobiDBLite | consensus disorder prediction | 430 | 465 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g01144 | Bda-Chr7:13579028 | Bda12g00047 | Bda-Chr12:290653 | 2.96E-113 | dispersed | |
Bda12g00306 | Bda-Chr12:3373031 | Bda07g01144 | Bda-Chr7:13579028 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16151 | PF00642 | zf-CCCH | 2.10E-09 | CL0537 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda07g01144 | - | - | qsu:112012560 | 723.391 |