Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01179 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGAAAAAATCAGTGGGCTCGTATCTCCTCCCTTCTCGTTCGTAAATCAGCCAAACAGTGTAAAGCTCGCTGGTATGAATGGCTTGACCCCTCCATTAAGAAGACGGAGTGGACAAGAGAGGAAGATGAGAAGCTTCTCCATCTTGCTAAGCTCATGCCAACTCAGTGGAGAACTATTGCTCCCATTGTCGGCCGGACTCCATCCCAGTGTCTTGAACGGTACGAAAAACTCCTTGATGCAGCATGTGTCAAAGATGACAACTATGAACCTGGTGATGACCCACGGAAGTTACGTCCTGGGGAGATAGACCCAAACCCTGAATCAAAGCCGGCACGTCCTGATCCCGTTGACATGGATGAAGATGAAAAAGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCAAATACTAGAGGTAAAAAAGCAAAGAGGAAAGCAAGGGAGAAACAGCTTGAAGAAGCTCGGCGACTTGCTTCTTTACAAAAGAGAAGAGAATTAAAGGCAGCCGGTATTGATAATAGACATCGGAAGAGGAAGAGGAAAGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGGTGACGAAGACAGACCTGTGGAGCAACCCAAATTTCCTACCACGATTGAAGAACTTGAGGGGAAAAGGAGAGTTGATGTTGAAGCACAATTAAGAAAGCAAGATGTTGCAAAGAATAAAATCGCACAAAGACAGGATGCTCCATCAGCTATATTGCAAGCCAACAAGTTAAATGATCCTGAAACCGTGAGAAAAAGATCAAAACTAATGCTTCCTGCTCCTCAAATTTCAGATCACGAACTAGAGGAAATTGCAAAGATGGGCTATGCTAGTGATCTTCTTACTGGGAGTGAGGAGCTCATTGAAGGCAGTGGAGCAACACGTGCTCTTCTTGCAAATTATGCTCAAACACCACGACAGGGAATGACACCTTTTCGGACACCACAAAGAACTCCTGCTGGTAAGGGAGATGCAATAATGATGGAAGCAGAAAACCTGGCTAGGTTAAGAGAGTCTCAGACACCATTGTTAGGAGGAGAGAATCCAGAGTTGCATCCATCAGATTTTTCTGGCGTCACTCCCAAGCGAAAAGAAATACAGACCCCAAATCTGATGTTGACACCCGCAGCAACACCTGGGGGCCCTGGTCTTACTCCAAGAAGTGGCTTGACGCCAGCCAGGGAAGGCTATTCCTTTGGAATAACTCCAAAGGGTACTCCGATTAGGGATGATTTACACATCAACGAAGAGATGGACATTCATGATAATGCTAAACTTGAGCTAAGGAGACAAGCCGATTTGAGGAGGAACTTACGTTCAGGTTTGGGAAATCTCCCACAGCCAAAGAATGAGTATCAAATAGTTATGCAGCCAGTTCAAGAAGACAGTGAGGAACCTGAGGAGAAAATTGAAGAGGATATGTCAGATAGAATTGCTAGAGAGAGAGCTGAGGAAGATGCACGGCAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAGCGAGAGCTTCCCAGACCTCCTATTGCTTCATTAGAATTAATTAAGAATTCTTTAATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCTCCTACTTCCATCGAACAGGCTGATGAAGTGATTAGGAAGGAGCTTGTATCACTACTGGAGCATGACAATGCAAAGTATCCTCTGAATGACAAAGTTAATAAAGAGAAGAGGAAAAGTATTAAGCGTTCTACTGTTGATCCCATCCCTACGATTGAAGAATTTGAAGAAGATGAGCTATATGAGGCTGTTTTTTTAATAAATGAAGAGGTTGAGGGCCTTCGAGTGGCTATGGGACATGAAAATGAATCCCTTGATGAATTTGTCGAGGCACATAAAACTTGCCAGAATGATCTCATGTATTTTCCCACTCGAAATGCTTATGGTCTTTCAAGTGTTGCTGGAAATATGGAGAAGCTTGCAGCCTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGAAGATACTGAAAAGGCTGTACGGATGGAGAAGAAGGTTAAAGTTCATACGCAGGGTTACGAGACAAGGGCTAAAACAAGCCTCTGGCCTCAAATTGAAGCAACCTTCAAGCAGATGGACACTGCTGCAACAGAACTCGAGTGCTTCCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCCTCTCACAGGATAAATATTCTCCGGGAAGAAGTTCAAAAGCAAAAGGAGCTTGAGCATATTTTACAGATGCGATATGCGAGTCGTGTAATGGAGTTGGAAAGAACACAACACCTCATTAATGAATACAGAGCAGAAGCAAAACAGCAAGAAGAAATCGCAGCTGCTAATCGTGCTCGTGAGCTAGAGATTACTGAAGCAAGTGAAAATAAAGGACTGACCGAAGAAACCGAAGCAATGACTTCTGTTGCAGGGGATTCATTAGCTGATGAAACTGCTTCTCAAAAACCGAGTACAGTTGATCCAGCAATAGTGAGTATGAATGTTGATTTACCCGACAATATTTCTTCTGCCGGTGAGGTGGGACCTGCAGTAGTAGCACAAGAAGATGGCAATGAAGATGGGATTTCGACGGAGGAAAATTTTGATTCTTCTGGGAAACTTTCTGAATCACTCCCTGCTGATGAAGACAAGATTTCAAGTGAGCAGCATAAGCATATCACAGAAAGCACGAACCCAGGTGTTGAGTCGACTCAACGAGATGAAACCACCCCTAGCTTGGCAGATAATGATGGCTTTAATGAGAAGCATGACTGA 2886 43.52 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDVAKNKIAQRQDAPSAILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLTGSEELIEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNLMLTPAATPGGPGLTPRSGLTPAREGYSFGITPKGTPIRDDLHINEEMDIHDNAKLELRRQADLRRNLRSGLGNLPQPKNEYQIVMQPVQEDSEEPEEKIEEDMSDRIARERAEEDARQQALLRKRSKVLQRELPRPPIASLELIKNSLMRADGDKSSFVPPTSIEQADEVIRKELVSLLEHDNAKYPLNDKVNKEKRKSIKRSTVDPIPTIEEFEEDELYEAVFLINEEVEGLRVAMGHENESLDEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDEDTEKAVRMEKKVKVHTQGYETRAKTSLWPQIEATFKQMDTAATELECFQALHKEELLAASHRINILREEVQKQKELEHILQMRYASRVMELERTQHLINEYRAEAKQQEEIAAANRARELEITEASENKGLTEETEAMTSVAGDSLADETASQKPSTVDPAIVSMNVDLPDNISSAGEVGPAVVAQEDGNEDGISTEENFDSSGKLSESLPADEDKISSEQHKHITESTNPGVESTQRDETTPSLADNDGFNEKHD 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14031398 14035688 - Bda026347.1 Bda07g01179 10069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01179 961 CDD SANT_CDC5_II 55 106 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 157 176 - -
Bda07g01179 961 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 840 - -
Bda07g01179 961 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bda07g01179 961 Gene3D - 5 58 - -
Bda07g01179 961 Coils Coil 796 823 - -
Bda07g01179 961 PANTHER - 1 840 - -
Bda07g01179 961 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Bda07g01179 961 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 837 864 - -
Bda07g01179 961 Coils Coil 682 716 - -
Bda07g01179 961 Pfam Myb-like DNA-binding domain 10 70 - -
Bda07g01179 961 Coils Coil 167 187 - -
Bda07g01179 961 SMART sant 58 105 IPR001005 -
Bda07g01179 961 SMART sant 6 55 IPR001005 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 913 928 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 110 150 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 892 961 - -
Bda07g01179 961 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bda07g01179 961 Pfam pre-mRNA splicing factor component 407 655 IPR021786 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 929 953 - -
Bda07g01179 961 CDD SANT 10 53 IPR001005 -
Bda07g01179 961 Gene3D - 59 114 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 827 864 - -
Bda07g01179 961 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01179 Bda-Chr7:14031398 Bda03g01467 Bda-Chr3:52603883 6.28E-11 dispersed
Bda12g00337 Bda-Chr12:3844894 Bda07g01179 Bda-Chr7:14031398 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16154 PF11831 Myb_Cef 5.00E-57 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01179 K12860 - csv:101205030 1380.93