Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01179 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGAAAAAATCAGTGGGCTCGTATCTCCTCCCTTCTCGTTCGTAAATCAGCCAAACAGTGTAAAGCTCGCTGGTATGAATGGCTTGACCCCTCCATTAAGAAGACGGAGTGGACAAGAGAGGAAGATGAGAAGCTTCTCCATCTTGCTAAGCTCATGCCAACTCAGTGGAGAACTATTGCTCCCATTGTCGGCCGGACTCCATCCCAGTGTCTTGAACGGTACGAAAAACTCCTTGATGCAGCATGTGTCAAAGATGACAACTATGAACCTGGTGATGACCCACGGAAGTTACGTCCTGGGGAGATAGACCCAAACCCTGAATCAAAGCCGGCACGTCCTGATCCCGTTGACATGGATGAAGATGAAAAAGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCAAATACTAGAGGTAAAAAAGCAAAGAGGAAAGCAAGGGAGAAACAGCTTGAAGAAGCTCGGCGACTTGCTTCTTTACAAAAGAGAAGAGAATTAAAGGCAGCCGGTATTGATAATAGACATCGGAAGAGGAAGAGGAAAGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGGTGACGAAGACAGACCTGTGGAGCAACCCAAATTTCCTACCACGATTGAAGAACTTGAGGGGAAAAGGAGAGTTGATGTTGAAGCACAATTAAGAAAGCAAGATGTTGCAAAGAATAAAATCGCACAAAGACAGGATGCTCCATCAGCTATATTGCAAGCCAACAAGTTAAATGATCCTGAAACCGTGAGAAAAAGATCAAAACTAATGCTTCCTGCTCCTCAAATTTCAGATCACGAACTAGAGGAAATTGCAAAGATGGGCTATGCTAGTGATCTTCTTACTGGGAGTGAGGAGCTCATTGAAGGCAGTGGAGCAACACGTGCTCTTCTTGCAAATTATGCTCAAACACCACGACAGGGAATGACACCTTTTCGGACACCACAAAGAACTCCTGCTGGTAAGGGAGATGCAATAATGATGGAAGCAGAAAACCTGGCTAGGTTAAGAGAGTCTCAGACACCATTGTTAGGAGGAGAGAATCCAGAGTTGCATCCATCAGATTTTTCTGGCGTCACTCCCAAGCGAAAAGAAATACAGACCCCAAATCTGATGTTGACACCCGCAGCAACACCTGGGGGCCCTGGTCTTACTCCAAGAAGTGGCTTGACGCCAGCCAGGGAAGGCTATTCCTTTGGAATAACTCCAAAGGGTACTCCGATTAGGGATGATTTACACATCAACGAAGAGATGGACATTCATGATAATGCTAAACTTGAGCTAAGGAGACAAGCCGATTTGAGGAGGAACTTACGTTCAGGTTTGGGAAATCTCCCACAGCCAAAGAATGAGTATCAAATAGTTATGCAGCCAGTTCAAGAAGACAGTGAGGAACCTGAGGAGAAAATTGAAGAGGATATGTCAGATAGAATTGCTAGAGAGAGAGCTGAGGAAGATGCACGGCAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAGCGAGAGCTTCCCAGACCTCCTATTGCTTCATTAGAATTAATTAAGAATTCTTTAATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCTCCTACTTCCATCGAACAGGCTGATGAAGTGATTAGGAAGGAGCTTGTATCACTACTGGAGCATGACAATGCAAAGTATCCTCTGAATGACAAAGTTAATAAAGAGAAGAGGAAAAGTATTAAGCGTTCTACTGTTGATCCCATCCCTACGATTGAAGAATTTGAAGAAGATGAGCTATATGAGGCTGTTTTTTTAATAAATGAAGAGGTTGAGGGCCTTCGAGTGGCTATGGGACATGAAAATGAATCCCTTGATGAATTTGTCGAGGCACATAAAACTTGCCAGAATGATCTCATGTATTTTCCCACTCGAAATGCTTATGGTCTTTCAAGTGTTGCTGGAAATATGGAGAAGCTTGCAGCCTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGAAGATACTGAAAAGGCTGTACGGATGGAGAAGAAGGTTAAAGTTCATACGCAGGGTTACGAGACAAGGGCTAAAACAAGCCTCTGGCCTCAAATTGAAGCAACCTTCAAGCAGATGGACACTGCTGCAACAGAACTCGAGTGCTTCCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCCTCTCACAGGATAAATATTCTCCGGGAAGAAGTTCAAAAGCAAAAGGAGCTTGAGCATATTTTACAGATGCGATATGCGAGTCGTGTAATGGAGTTGGAAAGAACACAACACCTCATTAATGAATACAGAGCAGAAGCAAAACAGCAAGAAGAAATCGCAGCTGCTAATCGTGCTCGTGAGCTAGAGATTACTGAAGCAAGTGAAAATAAAGGACTGACCGAAGAAACCGAAGCAATGACTTCTGTTGCAGGGGATTCATTAGCTGATGAAACTGCTTCTCAAAAACCGAGTACAGTTGATCCAGCAATAGTGAGTATGAATGTTGATTTACCCGACAATATTTCTTCTGCCGGTGAGGTGGGACCTGCAGTAGTAGCACAAGAAGATGGCAATGAAGATGGGATTTCGACGGAGGAAAATTTTGATTCTTCTGGGAAACTTTCTGAATCACTCCCTGCTGATGAAGACAAGATTTCAAGTGAGCAGCATAAGCATATCACAGAAAGCACGAACCCAGGTGTTGAGTCGACTCAACGAGATGAAACCACCCCTAGCTTGGCAGATAATGATGGCTTTAATGAGAAGCATGACTGA 2886 43.52 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDVAKNKIAQRQDAPSAILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLTGSEELIEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNLMLTPAATPGGPGLTPRSGLTPAREGYSFGITPKGTPIRDDLHINEEMDIHDNAKLELRRQADLRRNLRSGLGNLPQPKNEYQIVMQPVQEDSEEPEEKIEEDMSDRIARERAEEDARQQALLRKRSKVLQRELPRPPIASLELIKNSLMRADGDKSSFVPPTSIEQADEVIRKELVSLLEHDNAKYPLNDKVNKEKRKSIKRSTVDPIPTIEEFEEDELYEAVFLINEEVEGLRVAMGHENESLDEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDEDTEKAVRMEKKVKVHTQGYETRAKTSLWPQIEATFKQMDTAATELECFQALHKEELLAASHRINILREEVQKQKELEHILQMRYASRVMELERTQHLINEYRAEAKQQEEIAAANRARELEITEASENKGLTEETEAMTSVAGDSLADETASQKPSTVDPAIVSMNVDLPDNISSAGEVGPAVVAQEDGNEDGISTEENFDSSGKLSESLPADEDKISSEQHKHITESTNPGVESTQRDETTPSLADNDGFNEKHD 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14031398 14035688 - Bda026347.1 Bda07g01179 10069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01179 961 CDD SANT_CDC5_II 55 106 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 157 176 - -
Bda07g01179 961 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 840 - -
Bda07g01179 961 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bda07g01179 961 Gene3D - 5 58 - -
Bda07g01179 961 Coils Coil 796 823 - -
Bda07g01179 961 PANTHER - 1 840 - -
Bda07g01179 961 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Bda07g01179 961 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 837 864 - -
Bda07g01179 961 Coils Coil 682 716 - -
Bda07g01179 961 Pfam Myb-like DNA-binding domain 10 70 - -
Bda07g01179 961 Coils Coil 167 187 - -
Bda07g01179 961 SMART sant 58 105 IPR001005 -
Bda07g01179 961 SMART sant 6 55 IPR001005 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 913 928 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 110 150 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 892 961 - -
Bda07g01179 961 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bda07g01179 961 Pfam pre-mRNA splicing factor component 407 655 IPR021786 -
Bda07g01179 961 MobiDBLite consensus disorder prediction 929 953 - -
Bda07g01179 961 CDD SANT 10 53 IPR001005 -
Bda07g01179 961 Gene3D - 59 114 - -
Bda07g01179 961 MobiDBLite consensus disorder prediction 827 864 - -
Bda07g01179 961 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01179 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1380.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01179 Bda-Chr7:14031398 Bda03g01467 Bda-Chr3:52603883 6.28E-11 dispersed
Bda12g00337 Bda-Chr12:3844894 Bda07g01179 Bda-Chr7:14031398 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g604 . . Bda07g01179 . . Bpe09g00664 . . . . . . . Car12g00806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g00972 . . Cpe04g00013 Cpe05g00838 . . . . . . . . . . . . . . . Csa01g03419 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16154 PF11831 Myb_Cef 5.00E-57 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01179 Bda_Chr07 FPKM 0.536232 0.480512 0.0 0.0 1.942009 0.374929 2.426278 0.0 0.0