Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01215 ATGGCTTCCCAGCAGGACGATCCCGTCTTCCCCGACGAGGACCTCGACGATGACGAGGACTCTATTGACGAGGACGAAGACGATGACGACGAAGATGTCAATTCCGCCTCTCCTTCTACTTCTTTCGGCGCTGCTGCGGTTGTTGTTCCTGGTGCTTCCGTTTCTGTGGCTGTCGCCGGTTCGGTTTTAGGTCATTCGGTGCCGAACGGTGATCCTCCGGTTTCCACTGTCTCCGTCGTCAATGTTTCTAGCTCTAATTCACAGCAGCATCGGTTTGAGAATACCGTTACCGAGCCGTTGATTGTACAGGAGGAGAAGAAACCGATTGATGAGGCTCGGAGGCTGTTTCAGAGACTGTGGACGGATGAGGATGAGATCGGTCTCTTGCAAGGTTTCCTTGATTATACCGGGAATCGAGGTTCTATTCATCATCATCAATATGATACCGCTTTGTTCTACGACCAGATCAAGTCAAAGCTTCAGTTGGATTTCAACAAAAATCAGCTGGTGGAGAAGCTCCGTAGGTTGAAGAAGAAGTACCGTAACGTCATGGAAAAGCTTAATTCAGGAAAAGACTTCAATTTTAAAAGCCCTCACGATCAAGCCACCTTTGAGATCTCCCACAAGATCTGGAGCAACATCGTTAGAACAGGCGTAGATGATAACGCTCTAGACGATGATGATCCGAATCCTATTTCCATCAATTTCGAAATCAAAGAAGAGGAATTTACGGGTAACAGCGGAGAGAAAAGGACTTCGACACAATCGAGATCACGGAAACGTTCTAGATCCAAAGCAGGATTGCAAGCTATCGATACACGCCCATCTTATGAGACTCTGAACAAGGATAAAAATAGTTGTCATTATAGCAATATGAGTAACATGACTGGGCTGATTGAAGGGGCTGTGAGGAGTTGCTTATTGCCTTTGTTTAAGGAGTTGTTGAATAATGCGAGGGGTGGCACTTGTGGGGCAAGAGGTTTTGGTGGATTGGCATCGAATGCAATGCCATTGAGCTTTGATGGGTTGGTCAAGAATGGAGGGGAAATCGCAGACGATAGATGGAGAAAGCAGCAGATACTAGAGCTGGAGGTTTTTTCGAAGCGACTGGAATTAGTTCAGGATCAAATTAAGACTACACTGGAAGAGTTGCAGTTGATGGATGGAGATGCTAAAAGGCGATAA 1185 46.41 MASQQDDPVFPDEDLDDDEDSIDEDEDDDDEDVNSASPSTSFGAAAVVVPGASVSVAVAGSVLGHSVPNGDPPVSTVSVVNVSSSNSQQHRFENTVTEPLIVQEEKKPIDEARRLFQRLWTDEDEIGLLQGFLDYTGNRGSIHHHQYDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMEKLNSGKDFNFKSPHDQATFEISHKIWSNIVRTGVDDNALDDDDPNPISINFEIKEEEFTGNSGEKRTSTQSRSRKRSRSKAGLQAIDTRPSYETLNKDKNSCHYSNMSNMTGLIEGAVRSCLLPLFKELLNNARGGTCGARGFGGLASNAMPLSFDGLVKNGGEIADDRWRKQQILELEVFSKRLELVQDQIKTTLEELQLMDGDAKRR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14611627 14612811 + Bda026394.1 Bda07g01215 10105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01215 394 MobiDBLite consensus disorder prediction 1 40 - -
Bda07g01215 394 PANTHER BNAANNG10740D PROTEIN 1 387 - -
Bda07g01215 394 Coils Coil 166 190 - -
Bda07g01215 394 MobiDBLite consensus disorder prediction 9 34 - -
Bda07g01215 394 Pfam Protein of unknown function, DUF573 116 212 IPR007592 GO:0006355
Bda07g01215 394 MobiDBLite consensus disorder prediction 238 269 - -
Bda07g01215 394 PANTHER BNAANNG10740D PROTEIN-RELATED 1 387 IPR007592 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01215 - - - cmax:111495335 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01215 Bda-Chr7:14611627 Bda10g00462 Bda-Chr10:37585250 6.33E-28 dispersed
Bda14g00718 Bda-Chr14:5447916 Bda07g01215 Bda-Chr7:14611627 1.41E-11 transposed
Bda12g00386 Bda-Chr12:4528070 Bda07g01215 Bda-Chr7:14611627 2.62E-42 wgd
Bda07g01215 Bda-Chr7:14611627 Bda08g01023 Bda-Chr8:21197028 1.12E-113 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01215 . 77 226 GeBP Transcription Factor Family AT3G04930 62.5 1.8e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16159 PF04504 DUF573 5.60E-33 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01215 Bda_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0