Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01246 ATGGCGCTTGAAGCTGTGGTTTTTCAGCAAGACCCTGTTGGCTATAATGGCAGCAGAGATCTATACACCTTGTTGGTAGGACATGGTTGGAGAGAAGAAAGTTATGATCAAGGTGATTTTCGCGGGAGCCAAACAGAAAGTGATGTCCTTTTTGGTGATAATAGCAGCTTTTCGCCACCTTCGTCAATGGCGTCCAACTGGAACGAACTGCTACAAAACTCCAATGGAAGTGGGAAACTTCCGGGAGAGATTTCGCCGGATATTCGTCCGACGAGAAGACGACGATCGAAAAGCAGGAAAAACAAGGAAGAGATTGAGAATCAGAGAATGACCCACATTGCTGTTGAGAGGAATCGGAGAAAGTTGATGAATGAGTATCTCTCTGTGCTCCGGTCTCTGATGCCTGATTCTTATGTTCAAAGGGGCGATCAAGCCTCGATAATCGGAGGAGCCATTAATTTCGTGAAGGAGCTAGAACAGAAAGTGCATTTTCTCAGCAGCCAAACGGCAACCACAAAGCTAGAAAATTCCACAGAAGAAAACGACCCATCAATGCCGTTCTCCGAATTCTTCAGTTTTCCTCAGTACTCAACAACCTCGTCCCTCTCTTCCCCTCCTTCCGCCATTGGAGAACAGACCAAAACCTCCATTGCCGACATTGAAGTAAACATGGTAGAAAGCCACGCGAATATCAAAATAAGATCGAAAAGAAAGCCTAAACAGCTACTAAACATAGTGGCTGGTTTGCAGAGTTTGCATCTCACTGTTCTTCATCTGAATCTCACAACTTTGGATCAAATCATTCTGTATTCTCTAAGTGTGAAGGTGGAAGATGGTTGTAAGCTGTGTTCAGCAGATGAAATAGCTGCAGCTTTGTATGAATTGATGAGCAGAATTCAAGAGGAGGGAAATTCATTGTTTAGTTGA 927 44.12 MALEAVVFQQDPVGYNGSRDLYTLLVGHGWREESYDQGDFRGSQTESDVLFGDNSSFSPPSSMASNWNELLQNSNGSGKLPGEISPDIRPTRRRRSKSRKNKEEIENQRMTHIAVERNRRKLMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQKVHFLSSQTATTKLENSTEENDPSMPFSEFFSFPQYSTTSSLSSPPSAIGEQTKTSIADIEVNMVESHANIKIRSKRKPKQLLNIVAGLQSLHLTVLHLNLTTLDQIILYSLSVKVEDGCKLCSADEIAAALYELMSRIQEEGNSLFS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15306859 15307954 - Bda026444.1 Bda07g01246 10136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01246 308 MobiDBLite consensus disorder prediction 71 105 - -
Bda07g01246 308 PANTHER MAX DIMERIZATION, MAD 1 302 - -
Bda07g01246 308 Pfam Helix-loop-helix DNA-binding domain 108 159 IPR011598 GO:0046983
Bda07g01246 308 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 302 - -
Bda07g01246 308 SMART finulus 113 164 IPR011598 GO:0046983
Bda07g01246 308 Gene3D - 97 176 IPR036638 GO:0046983
Bda07g01246 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 158 IPR011598 GO:0046983
Bda07g01246 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01292 Bda-Chr6:43526317 Bda07g01246 Bda-Chr7:15306859 5.32E-52 dispersed
Bda07g01246 Bda-Chr7:15306859 Bda11g00398 Bda-Chr11:4316949 1.57E-59 dispersed
Bda07g01246 Bda-Chr7:15306859 Bda08g00632 Bda-Chr8:6507919 1.48E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16161 PF00010 HLH 4.40E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01246 - - qsu:112010387 302.753