Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01249 ATGGATCCTCAAGGACCAAGCCAACCTCCGTCGATGGGGGTGGTTGGGGGCGGGCTTCAATTTCCTTACGGTTCGAGTTTTTACGAGCCGAACCAGATCGCTGGAACCCAAAGTGCAGGGCCAATGATCGGAGCCGTTCAATCCGCAAGCCAGCCCGGGGGACCCCAGCTAGCATTTCAGCAGATGCATCAGCAACTCCAGCAGCAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAGAAGGTGACAGATTTCAAAAACCATAGCCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCCGACGAAGATGTGCGGATGATCTCGGCCGAGGCCCCCGTCGTGTTTGCTAGGGCTTGTGAAATGTTCATCTTGGAATTGACCCTCCGATCGTGGAATCACACGGAGGAGAACAAACGGAGGACGCTCCAGAAGAACGACATCGCAGCCGCAATCACAAGAACTGATATCTTTGACTTTTTGGTTGACATTGTCCCGAGGGACGATCCAAAAGATGAAGTGCTCGCCTCCTTCCCTCGGGGAGCTATGCCGGTTGGGGGCCCGGTCGACGGGATCCCGTACGACATGCCACCTCAGCATCCAGGGATGATGGCAGGGATGTACGCCCCTCCACCTCACCCCTACATGGTCCCGCAAATGTGGCCTCACGTACCGGATCAACATCAATCGAGTTCCGATCAGTAG 711 55.41 MDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQIAGTQSAGPMIGAVQSASQPGGPQLAFQQMHQQLQQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGGPVDGIPYDMPPQHPGMMAGMYAPPPHPYMVPQMWPHVPDQHQSSSDQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15332462 15333172 + Bda026448.1 Bda07g01249 10139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01249 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 236 - -
Bda07g01249 236 SUPERFAMILY Histone-fold 66 163 IPR009072 GO:0046982
Bda07g01249 236 Gene3D Histone, subunit A 56 169 IPR009072 GO:0046982
Bda07g01249 236 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 236 - -
Bda07g01249 236 Pfam Core histone H2A/H2B/H3/H4 60 154 IPR007125 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01249 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01249 Bda-Chr7:15332462 Bda15g00051 Bda-Chr15:1980174 1.01E-67 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01357 . 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 83.2 1.8e-83 305.8
Bda15g00051 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 2.0e-50 196.1
Bda07g01249 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.9e-49 192.2
Bda07g01249 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 75.5 2.1e-52 202.6
Bda15g00051 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 2.6e-47 185.7
Bda14g01357 . 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.2e-41 166.0
Bda07g01249 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 1.1e-52 203.4
Bda15g00051 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.9 1.1e-50 196.8
Bda14g01357 . 53 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.9 1.8e-50 196.1
Bda14g01357 . 58 210 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 1.1e-36 150.2
Bda14g01357 . 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 76.3 1.5e-75 279.6
Bda15g00051 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.7e-47 185.3
Bda07g01249 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.3e-44 176.0
Bda15g00051 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 5.0e-63 237.7
Bda14g01357 . 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.2e-49 191.8
Bda07g01249 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.6e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16162 PF00808 CBFD_NFYB_HMF 3.90E-18 CL0012 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01249 Bda_Chr07 FPKM 5.84127 6.225121 8.341418 8.71601 3.429002 3.899671 4.21637 17.616045 17.054432