Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01281 ATGTCGTTGGAAAAGTTGATTGCTGCCGGTGCTCCTCAGTCTGAGGCAGCGCCGCCGGAATCTATTTCTGTCTCTCACTCGTTCCGGCAATGGAGCGAACATACTTGGATTTTCGAGGAGCTTCCCACGGCAGACATTGTTTCGGTGTCCCCTCCTGATTCTGCAGATTTTACCCCCATGCTGCTGTCCTACACTATTGAGATTCACTATAAACAGAAGCTAATCGCCATTTTCTTTAACTGGCGCTTGGTGAAGAAAGCTTCACAGGTTCTTTACTTACATTTTGCTTTGAAGAAACGTGCTATTATTGAAGATATTCAAGAGAAACAAGAGCAGGTGAAAGAATGGCTTCAAAGTTTAGGAATAGCAGATCAAGCAGCAGTTGTCCTTGACGCTGATGAACCTGATGATGGAGCCTTTCCTTTACACAGCGAAGATGGCGTCAGAAACAGGGACGTTCCATCCATTGCTGCTTTACCGATCATTCGGCCAGCACTGGGAAGGCATCAGAGCATTTCAGACACGGCAAAGATAGCAATGCAGAATTATTTGAACCATTTTCTTGGAAACATGGACATTGTGAATTCTCGTGAGGTCTGCAAATTTCTAGAAGTCTCCAAAATGTCATTCTTGAGAGAATACGGTCCGAAGTTAAAGGAAGGCTATTTAATGGTGAACCATTTGAAGAAGCTTTCTAGAGTAGATTCTGCTTTAAAATGTTTTCCTTTCTTTTGTTTCGGTTGCTGGGAAGACGATTGGAAAAAGGTCTGGGGTGTTTTAAAACCTGGATTCTTGGCTCTCCTGGATGACCCATTCAATGCTAACCTTTTAGATATAATAGTTTTTGATGTCCTGCCTGCCGTAGATGGAAAAAAGGCTCCTAAAGTTTGTTTAGCAAATGTTGTCAAAGAGCACAATCCTTTAAGATATTCATTTAAGGTTACACAAGGAAATGGCAGCATGAAGATTAGAACCACTAGTAGTGTTAAGGCTAAAGACTGGATTTCAGCAATTAATGATGCTGGTATGAGGCCTCTAGAGGGCTGGTGTCGTCCACATCGCTTCGATTCCTTTGCTCCTCAAAGAGGTCTGAGCAATGATGGGAGCCTAGGTCAATGGTTTATAGATGGCAAAGCAGCATTTGAAGCGATTGCTTCTGCCATTGAGAATGCAAAATCCGAGATATTCATGACTGGTTGGTGGCTTTGTCCAGAGCTTTATCTACGGCGTCCTTTTGATCTTCATTCTTCCTCACGACTCGATACATTACTGGAAGCAAAAGCGAAGGGTGGGGTTAAGAGAAATAAAGCCCCAAATGAACAAACAATTCCTCTACTAATGCCTCATCATCATATTGTCATCCCTCATTACATGGGAAGAAGTGAAGAAATGGACATTCCAAAGAACACCAGAGAAGAAGACGTAAACAGGCAGGATTCCTTTCTATCACGATCATCCCTTCAAGATATCCCATTACTTTTGCCTCAGGAAGCTGACAGACTTCTGAATTCCAATGTTCAAACGAAGCTTGTTAACAAATGTGAGAGGAATCCTAATCTTCATGAACAGTTGACTGAGGTTGGAGGAAGTTTTTCATTTTCTCACCAAAATCCCAAAGTTGAGTCCTTGTCTCCGCATGCACAGACGAAAGACTTTGGAGGTGACTTTGAGTTTATGAATGTTTTTGATAGCGAGAGGAGGCCAGATGACGAAGACCATGATGTTGAAGATGACACTGGAGAAGTTGGTCCTCCTATAGCATGTCGTTGTCAGGTAGTAAGAAGTGTCAGCTATTGGTCAGATGGAACTGGTAAACCAGAAGAAAGCATTCATAAAGCTTACTGTTCTCTCATCGAGGAGGCAGAACATTTTATTTACATAGAGAATCAATTTTTTATATCAGGTCTTTCAGGAGATGAAATTGTACAAAATCGTATCCTAGAAGCACTATATCGACGTATTTTACGGGCATATAAAAGTGATAAATGTTTTAGGGTCATTGTTGTCATACCACTCATACCTGGATTTCAGGGTGGCGTGGATGACAATGGGGCAGCAACTGTAAGAGCCCTGATGCATTGGCAATATCGAACAATAAGCCAGACAAAGACTTCAATAATGCATAATCTCAATGCTTTACTCGGTCCTAAAGCACATGATTACATCTCATTTTATGGCCTCAGATCACATGGTATACTTTTTAATGGCGGCCCTATTGCCACAAGTCAGGTATGTTCTATTGGAAGTAATGTGCAATTCTTGGCTACAGACTTAAAGCTTGTACTACACTGTATAATTGTGTTTCAGGTGTACGTTCACAGCAAATTGATGATAATTGACGATAGAATTTCAGTGATTGGATCGTCAAATATTAATGATAGGAGTTTGCTTGGATCAAGAGACTCAGAGATTGCGATGGTGCTTGAGGATAAAGAGTTTGTTGAGTCAGCAATGGATGGAAAACCATGGAAAGCTGGGAAATTTTCTTACAGCCTTCGATGCGCTTTGTGGTCTGAGCACCTTGGTCTTCAACCAAGAGAGATTGATAAAATCAGCGATCCAGTAGCAGAAACAACATATAGAGATTTATGGTTAGCAACGGCTAAGGAGAATACAAGGATCTATCAAGATGTCTTTGGCTGCATTCCAAATGATAATATAAAATCAAGATCAGCTTTAAGACAGAACATGGCTTTTTGGAAGGAGAAACTTGGTCACACTACCATAGATTTAGGACTAGCCTCGGAGAAGCTCGAAACCTGCGAGAATGGAGGAGAAGTTAAGGTGACAGATTTAGGAGAGATGCTCAAGTCTGTGAGGGGATTTCTTGTTTGTTTCCCATTAGAGTTCATGAGTCAAGAAGATTTAAGGCCATTTTTCAATGAAAGTGAGTTTTATGCTCCTCAGGTGTTTCTTTAA 2919 41.32 MSLEKLIAAGAPQSEAAPPESISVSHSFRQWSEHTWIFEELPTADIVSVSPPDSADFTPMLLSYTIEIHYKQKLIAIFFNWRLVKKASQVLYLHFALKKRAIIEDIQEKQEQVKEWLQSLGIADQAAVVLDADEPDDGAFPLHSEDGVRNRDVPSIAALPIIRPALGRHQSISDTAKIAMQNYLNHFLGNMDIVNSREVCKFLEVSKMSFLREYGPKLKEGYLMVNHLKKLSRVDSALKCFPFFCFGCWEDDWKKVWGVLKPGFLALLDDPFNANLLDIIVFDVLPAVDGKKAPKVCLANVVKEHNPLRYSFKVTQGNGSMKIRTTSSVKAKDWISAINDAGMRPLEGWCRPHRFDSFAPQRGLSNDGSLGQWFIDGKAAFEAIASAIENAKSEIFMTGWWLCPELYLRRPFDLHSSSRLDTLLEAKAKGGVKRNKAPNEQTIPLLMPHHHIVIPHYMGRSEEMDIPKNTREEDVNRQDSFLSRSSLQDIPLLLPQEADRLLNSNVQTKLVNKCERNPNLHEQLTEVGGSFSFSHQNPKVESLSPHAQTKDFGGDFEFMNVFDSERRPDDEDHDVEDDTGEVGPPIACRCQVVRSVSYWSDGTGKPEESIHKAYCSLIEEAEHFIYIENQFFISGLSGDEIVQNRILEALYRRILRAYKSDKCFRVIVVIPLIPGFQGGVDDNGAATVRALMHWQYRTISQTKTSIMHNLNALLGPKAHDYISFYGLRSHGILFNGGPIATSQVCSIGSNVQFLATDLKLVLHCIIVFQVYVHSKLMIIDDRISVIGSSNINDRSLLGSRDSEIAMVLEDKEFVESAMDGKPWKAGKFSYSLRCALWSEHLGLQPREIDKISDPVAETTYRDLWLATAKENTRIYQDVFGCIPNDNIKSRSALRQNMAFWKEKLGHTTIDLGLASEKLETCENGGEVKVTDLGEMLKSVRGFLVCFPLEFMSQEDLRPFFNESEFYAPQVFL 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15658298 15665817 + Bda026487.1 Bda07g01281 10171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01281 972 SUPERFAMILY PH domain-like 249 341 - -
Bda07g01281 972 PANTHER PHOSPHOLIPASE D ZETA 2 25 433 - -
Bda07g01281 972 PANTHER PHOSPHOLIPASE D ZETA 2 433 969 - -
Bda07g01281 972 SUPERFAMILY Phospholipase D/nuclease 341 433 - -
Bda07g01281 972 ProSiteProfiles PH domain profile. 216 343 IPR001849 -
Bda07g01281 972 Gene3D Endonuclease Chain A 567 831 - -
Bda07g01281 972 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 768 795 IPR001736 GO:0003824
Bda07g01281 972 Pfam PLD-like domain 770 815 IPR025202 -
Bda07g01281 972 PIRSF PLD_euk 457 762 IPR016555 GO:0004630|GO:0006654|GO:0048017
Bda07g01281 972 PIRSF PLD_euk 17 434 IPR016555 GO:0004630|GO:0006654|GO:0048017
Bda07g01281 972 PIRSF PLD_euk 759 971 IPR016555 GO:0004630|GO:0006654|GO:0048017
Bda07g01281 972 SMART PH_update 217 345 IPR001849 -
Bda07g01281 972 CDD PLDc_vPLD1_2_yPLD_like_2 602 812 - -
Bda07g01281 972 Gene3D - 217 344 IPR011993 -
Bda07g01281 972 SUPERFAMILY Phospholipase D/nuclease 582 818 - -
Bda07g01281 972 SMART pld_4 768 795 IPR001736 GO:0003824
Bda07g01281 972 PANTHER PHOSPHOLIPASE D 25 433 IPR015679 -
Bda07g01281 972 PANTHER PHOSPHOLIPASE D 433 969 IPR015679 -
Bda07g01281 972 CDD PH_PLD 194 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01281 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - jre:109021076 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01281 Bda-Chr7:15658298 Bda08g00300 Bda-Chr8:3135500 3.65E-156 dispersed
Bda07g01281 Bda-Chr7:15658298 Bda04g00828 Bda-Chr4:58155369 2.18E-22 transposed
Bda07g01281 Bda-Chr7:15658298 Bda06g00065 Bda-Chr6:656717 5.98E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001766 2 4 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 2 2 2 2 3 4 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01281 Bda_Chr07 FPKM 5.374274 5.572473 7.253538 9.027087 8.655383 8.869592 8.06059 9.173575 9.526833