Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01302 ATGGTTTGCCGAGAAGAGCCTTTGGTACGCAAAGTCTGCGAAATGTACGACCAAATCTCAAACCTGGAGAACCTCAAACCTTGCAAAAATGTCGACATACTCTTCACCCAGCTGGTGCTGACTTGCATACAGCCAAGCCCTGTTGATGTAGCCAAACTTTGCACGAGGGTTCAGCAAGTCAGAGCCAAACTCATTCGGCTCTGCGCTGAGGCCGAGGGTCTTTTAGAAAGCCATTTCTCGACCATCTTAGCCTCTTTTAAAAACCCACTTCAAAGTCTCGACCTTTTCCCTTACTATCCCAACTACCTCAAACTTAGCCTTCTTGAGTTCAATATCCTTACAGATCATTGCGAAAATCCACCCTCAAAACTTGCTTTTATTGGGTCTGGATCACTTCCTCTCACCTCCATTGTTTTAGCCCTTAATCACCTCCCTTCCACCATTTTTCACAACTATGATATCGACCCTTCAGCCAACTCTAAGGCTTTATCTTTGATTTCATCTCATCCTGATTTGTCAAAAAGAATGTTTTTTCACACTGCTGATATAATGAACGTTACCAATGCTTTGAAAGAGTATCAAGTCCTGTTTTTAGCTGCTTTAGTTGGTATGAACAAGGAAGAGAAAGCTAAAGTTGTAGACCATTTGTGCAAGTTTATGGCTCCTGGAGCTTATCTGATGGTTCGAAGCGCCCATGGAGCAAGGGCTTTTCTGTACCCAGTTGTTGAATTTGCCGATCTTCGCGGGTTTGAGATCCTGTCTGTGTTTCACCCAACTGACGAGATTATAAATTCGGTCATTATTGCGAGGAAAAAGACGATATCTGTTGATCGATTTGATGAGCAAGGGAACAAATTCCATGGTAATGCCTTGTAA 876 43.04 MVCREEPLVRKVCEMYDQISNLENLKPCKNVDILFTQLVLTCIQPSPVDVAKLCTRVQQVRAKLIRLCAEAEGLLESHFSTILASFKNPLQSLDLFPYYPNYLKLSLLEFNILTDHCENPPSKLAFIGSGSLPLTSIVLALNHLPSTIFHNYDIDPSANSKALSLISSHPDLSKRMFFHTADIMNVTNALKEYQVLFLAALVGMNKEEKAKVVDHLCKFMAPGAYLMVRSAHGARAFLYPVVEFADLRGFEILSVFHPTDEIINSVIIARKKTISVDRFDEQGNKFHGNAL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15861505 15862380 + Bda026506.1 Bda07g01302 10192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01302 291 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Bda07g01302 291 PANTHER NICOTIANAMINE SYNTHASE 3 1 281 IPR004298 GO:0030410|GO:0030418
Bda07g01302 291 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Bda07g01302 291 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Bda07g01302 291 PANTHER SYNTHASE, PUTATIVE-RELATED 1 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01302 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - tcc:18600574 428.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01302 Bda-Chr7:15861505 Bda12g00443 Bda-Chr12:5441861 2.67E-175 dispersed
Bda07g01301 Bda-Chr7:15857419 Bda07g01302 Bda-Chr7:15861505 8.77E-136 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01652 . 1 318 Nicotianamine Synthase Gene Family AT1G09240 60.6 4.1e-107 384.8
Bda01g01647 CCT 1 318 Nicotianamine Synthase Gene Family AT1G09240 60.3 3.5e-106 381.7
Bda07g01301 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 65.0 2.4e-99 359.0
Bda07g01302 . 1 274 Nicotianamine Synthase Gene Family AT1G09240 62.1 1.1e-96 350.1
Bda12g00443 BCT,CCT 1 285 Nicotianamine Synthase Gene Family AT1G09240 61.2 1.5e-96 349.7
Bda02g00283 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 53.0 2.3e-73 272.7
Bda01g01652 . 3 318 Nicotianamine Synthase Gene Family AT1G56430 59.0 6.9e-102 367.5
Bda01g01647 CCT 3 318 Nicotianamine Synthase Gene Family AT1G56430 59.0 1.5e-101 366.3
Bda07g01301 BCT,CCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 64.0 2.1e-98 355.9
Bda07g01302 . 3 271 Nicotianamine Synthase Gene Family AT1G56430 62.9 1.9e-96 349.4
Bda12g00443 BCT,CCT 4 306 Nicotianamine Synthase Gene Family AT1G56430 54.7 3.4e-93 338.6
Bda02g00283 . 16 281 Nicotianamine Synthase Gene Family AT1G56430 51.1 3.3e-72 268.9
Bda01g01652 . 1 311 Nicotianamine Synthase Gene Family AT5G04950 57.9 4.9e-100 361.3
Bda01g01647 CCT 1 311 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.1e-99 360.1
Bda07g01301 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 61.5 6.6e-97 350.9
Bda12g00443 BCT,CCT 1 303 Nicotianamine Synthase Gene Family AT5G04950 55.6 8.9e-94 340.5
Bda07g01302 . 1 271 Nicotianamine Synthase Gene Family AT5G04950 57.8 1.7e-92 336.3
Bda02g00283 . 15 281 Nicotianamine Synthase Gene Family AT5G04950 50.6 7.8e-74 274.2
Bda01g01652 . 1 313 Nicotianamine Synthase Gene Family AT5G56080 56.1 4.7e-95 344.7
Bda07g01301 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 60.9 8.0e-95 344.0
Bda01g01647 CCT 1 313 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.0e-94 343.6
Bda12g00443 BCT,CCT 1 303 Nicotianamine Synthase Gene Family AT5G56080 55.6 4.9e-92 334.7
Bda07g01302 . 1 271 Nicotianamine Synthase Gene Family AT5G56080 57.3 1.1e-88 323.6
Bda02g00283 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 51.9 3.5e-74 275.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda07g01302 Bda_Chr07 FPKM 0.041311 0.09446 0.0 0.0 0.0 0.0 0.0 0.034302 0.047113