Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01328 GAGGGAGCTTGTGGCTATGGCGATCTGTTCAAACAAGGCTATGGGCTAGAAACAACAGCACTGAGCTCTGCTCTCTTCAACGACGGAAAGACTTGCGGTGCATGCTACGAGTTACAATGCGTAGACTCACAATATTGTAAATCCGGCTCCATCAAAGTCACAGCCACCAATTACTGCCCACCCTCCGACCATCCATCTGGAAATTGGTGCAACGCGCCGCAAAAACACTTTGATTTGACTGAGCCCATGTTCTTAAAGATCGCTGAATACAAAGCCGGCATCGTCCCGATCCAATTCCGGAAAATTCCCTGCGCGAAGAGCGGAGGTATCAAATTCGAGATCAACGGAAACCCTAATTATCTGCTCGTTTTGGTTTTCAACGTCGGAGGTGCCGGCGACGTTGTTGACGTGAAAGTCAAGGGATCCAACACCAATTGGTTGCAGATGAACCGTAACTGGGGCGACAAGTGGGACAACGGCACGCCATTGGTAGGGCAGAGCTTGTCGTTCCAGGTGACTACTAGCGACGGGAGGTCGGTGGAATGCGACAATTGCGCTCCGGCTAATTGGCAATTCGGCCAGACCTATGAATCAAGTACCAATTTCTAG 609 50.57 EGACGYGDLFKQGYGLETTALSSALFNDGKTCGACYELQCVDSQYCKSGSIKVTATNYCPPSDHPSGNWCNAPQKHFDLTEPMFLKIAEYKAGIVPIQFRKIPCAKSGGIKFEINGNPNYLLVLVFNVGGAGDVVDVKVKGSNTNWLQMNRNWGDKWDNGTPLVGQSLSFQVTTSDGRSVECDNCAPANWQFGQTYESSTNF 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16055293 16055901 + Bda026533.1 Bda07g01328 10218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01328 202 Pfam Expansin C-terminal domain 110 187 IPR007117 -
Bda07g01328 202 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 109 IPR007112 -
Bda07g01328 202 Gene3D - 108 202 IPR036749 -
Bda07g01328 202 PRINTS Expansin/Lol pI family signature 146 160 IPR007118 GO:0005576
Bda07g01328 202 PRINTS Expansin/Lol pI family signature 22 40 IPR007118 GO:0005576
Bda07g01328 202 PRINTS Expansin/Lol pI family signature 92 108 IPR007118 GO:0005576
Bda07g01328 202 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Bda07g01328 202 PANTHER EXPANSIN-A21-RELATED 1 202 - -
Bda07g01328 202 Pfam Lytic transglycolase 18 99 IPR009009 -
Bda07g01328 202 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 119 198 IPR007117 -
Bda07g01328 202 Gene3D - 1 105 IPR036908 -
Bda07g01328 202 SMART dpbb_1 18 99 IPR007112 -
Bda07g01328 202 SUPERFAMILY Barwin-like endoglucanases 2 127 IPR036908 -
Bda07g01328 202 PRINTS Expansin signature 39 50 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 84 97 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 51 61 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 13 27 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 108 120 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 184 200 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 67 84 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 120 141 IPR002963 GO:0009664
Bda07g01328 202 PRINTS Expansin signature 155 176 IPR002963 GO:0009664
Bda07g01328 202 SUPERFAMILY PHL pollen allergen 106 198 IPR036749 -
Bda07g01328 202 PANTHER EXPANSIN-A15 1 202 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01328 Bda-Chr7:16055293 Bda06g00541 Bda-Chr6:7696263 1.46E-86 dispersed
Bda07g01328 Bda-Chr7:16055293 Bda14g00205 Bda-Chr14:1429819 4.59E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01328 - - mnt:112090940 304.679