Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01364 TCTTCTTTCCAGGTGACACAGCACAAGATATCAGTCTGTCAGAAGACTTTGCCCCATGAAAGTGCAATCACTCATACCCAAGATTCCTCGGGTGGAGTGGGGATAAGATCAGCAAATTCTAAGGGAAAAAAGACTGCATCCACTGATTCTCCCTTAGGTCAACAAAACAATGGGTCTGCTAGTTCACTTGGCCATGGGCCAAATTCAACTGGACGAAAAGCCCAGTTAATGAATGCTAATCATTTGCTGAACTTCCATTATGATACCATTTCACGTCCTCAACCAAGAGCTCCTCCTCCAAGAAGGCAGAAATTAAAGCCATACAACAAAGCTCTATTTCTTCAGGCTAATTATAAATTTGTGGTATTAGACTCGGGTAATTATATACCTGAGTCTTTGGATCCAGATAAAATGTTGCATTGGGATGAGATTATATGTGTGAGGTATTCAACACCAACTCTCATTCGGTGTCCTATTTGTTTGGAATATCCCCTATGTCCTCAAATTACCACATGTGGGCATATTTTTTGTTTCCCATGTATTCTACGTCACTTGTTAATGGGAGAAGAGGATCATAAAGGTGACTGTTGGAAAAAGTGTCCCTTGTGTTTTGTTATGATATCTCCAAAAGATTTATATACAGTACACATTGAGACTGTTGAACCGTTTTCTGTTGGTGATACTATATCATTCACACTTTTGAACCGGCAGAAAGATTCATTTGTTATATCACATAAGCATGAACAAGACAATAAAGGCATACCATTTGATGTTAGCGATGAAATTTACGATCGCTTTTCGAAATTCACATTTACATTGGATGTGAATCTCTCAGTCAGAAAAGCAAAGTCAGATCTAGAAGAATGGTTGGTCAGAGCAGAAGCAGGTCTTGTTGATGACCTAGAGAAGCTTCCATATGTTTGTGCTGCAATCGAGCAACTAGATCAGAGGAAAATGCATTTGAATGAGCATCTGGCTGCTGTGAAGAGTCAGTCCTGTCAAAATATTGACTGTCAGGGAGAAACTCATTCAGTCAAGTCCAATGCTGATGTTGATATCTCTGGTTGTGGAACATCCTGTTTTGGAGATGCATTTTTGGCTTCTGAATTCAATGAACAAAGCACGAGGTATGATAATGCAATCACTTTGAATGGTACTTCTTTGGAGCAAACGACGGATATGGGTGAATCATTAGAAGGTCAAGAACTTGTTTTATCTTCTTCATACGAGGAAGATAGTATCGTTCATGGGATCTCAAATCAATGTAGATCAGTAGAAAAGAAAGAGTCATACAATTTCTACCAGGCGGCCGATGGGCAATACATCATTCTTCATCCACTAAATGTTAAGTGTCTTCTACACCATTATGGAAGCTACGCCATGCTTCCAGACAGGATAAGTGGAAGAATCTTACAGATGGAGACAGTGACTCAGTCGGAAGCCAGTAGGAGGCGCTATCGCTATCTAAGTCATTTTTCTTTGACAACTACCTTCCAGCTTTGCGAAGTTGATTTGAGTGAATTACTGCCTCCTGCGTCCCTCATTCCGTTTATGGACGAAATAAAGAAGCGTGAAAAGCAGAGGAAACAAATTGCTAAGAAGGAATATAAGGAGAAGATCAAGGCAGAAACTGCAGCAACATATTCTATAGTTGGTTTACATAACTTTGGACATTTCATTCATGATGATACCCCATCTTTCTCTATGGATGATTTTGAAGCTTTGGGAAGTTCTGGGGGTACATCATCCAGCCCTCCAATTGTGGCGGATAGAAAACTCTTTTCAAACGTTACAAAGCTCGGGTTTGCGGCGGGGCACGATAGTCCGCAGTTGAAGATGGACGAAACAAAAATCCTATTGTATGTAATGACAACTCTCATTGTGGTGATGATAGGGACGAGGAATGTATCGTTTGCCAATGTTATATTGAGAGCCAAGAATGACGAAACCACGGATGCACCACCCAAGAACAGTGAATTGGGGAAAAAGGGGAAGAAACCAAGTAGAGTTCTTCTATCAACGTCGGGAGGCCGGAGATACTGA 2043 40.77 SSFQVTQHKISVCQKTLPHESAITHTQDSSGGVGIRSANSKGKKTASTDSPLGQQNNGSASSLGHGPNSTGRKAQLMNANHLLNFHYDTISRPQPRAPPPRRQKLKPYNKALFLQANYKFVVLDSGNYIPESLDPDKMLHWDEIICVRYSTPTLIRCPICLEYPLCPQITTCGHIFCFPCILRHLLMGEEDHKGDCWKKCPLCFVMISPKDLYTVHIETVEPFSVGDTISFTLLNRQKDSFVISHKHEQDNKGIPFDVSDEIYDRFSKFTFTLDVNLSVRKAKSDLEEWLVRAEAGLVDDLEKLPYVCAAIEQLDQRKMHLNEHLAAVKSQSCQNIDCQGETHSVKSNADVDISGCGTSCFGDAFLASEFNEQSTRYDNAITLNGTSLEQTTDMGESLEGQELVLSSSYEEDSIVHGISNQCRSVEKKESYNFYQAADGQYIILHPLNVKCLLHHYGSYAMLPDRISGRILQMETVTQSEASRRRYRYLSHFSLTTTFQLCEVDLSELLPPASLIPFMDEIKKREKQRKQIAKKEYKEKIKAETAATYSIVGLHNFGHFIHDDTPSFSMDDFEALGSSGGTSSSPPIVADRKLFSNVTKLGFAAGHDSPQLKMDETKILLYVMTTLIVVMIGTRNVSFANVILRAKNDETTDAPPKNSELGKKGKKPSRVLLSTSGGRRY 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16487716 16490858 + Bda026564.1 Bda07g01364 10254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01364 680 MobiDBLite consensus disorder prediction 649 666 - -
Bda07g01364 680 SUPERFAMILY RING/U-box 156 210 - -
Bda07g01364 680 Coils Coil 311 331 - -
Bda07g01364 680 PANTHER RING FINGER 10 FAMILY MEMBER 27 677 IPR039739 -
Bda07g01364 680 SMART ring_2 157 203 IPR001841 -
Bda07g01364 680 Pfam Zinc finger, C3HC4 type (RING finger) 157 203 IPR018957 GO:0046872
Bda07g01364 680 Coils Coil 522 542 - -
Bda07g01364 680 MobiDBLite consensus disorder prediction 649 680 - -
Bda07g01364 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 250 IPR013083 -
Bda07g01364 680 CDD RING-HC_RNF10 157 204 - -
Bda07g01364 680 MobiDBLite consensus disorder prediction 21 73 - -
Bda07g01364 680 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Bda07g01364 680 ProSiteProfiles Zinc finger RING-type profile. 157 203 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01364 Bda-Chr7:16487716 Bda07g00997 Bda-Chr7:11783352 4.45E-06 dispersed
Bda07g01364 Bda-Chr7:16487716 Bda13g00664 Bda-Chr13:7562193 1.07E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01364 - - jre:109001292 761.911