Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01391 GAGGAGATGGGAAGGGGAAGGACCGGAGGAGGCGGGTTGCCGACTAGACGGGGCAGAGTAGAACTTTTATCAAGAATCAAATCTTTTAAATCGAACTCCCAGTTCCCAATTATCGAGGATATTGTCGATTATCTTCGCTCCACCTACAGAGACTATAGTAGAATGAAGCTGAGACCCTTTACTAAGATTGTCCAGGAAACTCTCACAACATCGGCGCTGTCTCAGCAAAAAACGAACCAGAATAGTGGGATATCTGACTCTTCTTCTGCGCCGACAAGAAAGAAGAGGAGAGTAGAGGAGGATGAAGAGGAAGGGAGCGAAGAAGAATATTGTACACAAGGAATTGCGAGGAAGAGGACCAAGGTAGGTGATAAGGGCGAGCAGAGATTGCAGCGGATGGAAGATGTGCACCTTAGGAGGATGCGACGAACTGTTCACGGCCGTCAATCCTTGTCTGCATCTTCTGCATCTGATTCTAATGATGATGCGGAAGACGAAAGCGATGAGGCGGTTTCTACATCTGAAGATGCAATTTTTGGAGAGAAAGTGGAGCCTCAGTTCGATTTGATGAAGTCTATGCTGCGATCATCTTATATGGAAATTAATAACCCAAAGCTCAAGTCAGAAAAGAAAATTTTGGAATTGGAGGTTGCCGTTGAAAATGAGGTTGCCAAAAAGATCAATCCAGCAAATGAAGGAAATAGAGGCGAGGGAACGCTGAAGTCTGGTTCAAAAAAAGAAGCCAGTAATCCGTTTGATGGATTGGAGATGAAAGGAAAGAATGGCCCGATGTTCAGCTATTTAGGGGGAATGGATGAGCTCCTAGAGGAGTTGAAGAAGGATGTGCTGTTGCCCCTTTATCATCCGCATGTTCCCCAGGGACTAGGGTTCAAGCCCACTACTGGGATTTTGCTGCACGGGCCACCTGGCTGCGGGAAGACTACATTGGCTCAGGCTATTGCAAATGAGACTGGTTTTCCCTTTTACAAGATTTCTGCTGCTGAAGTGGTTTCAGGAATTTCAGGTTCATCAGAAGAAAGTATCAGGGAACTTTTTTCAAAAGCATATAAGACTGCTCCATCAATTGTCTTTATTGATGAAATTGAAGTAATTGCGTCAAAGAGAGAAAAGCTGCAAAGGGAGACGGATAAACGAATTGTAACACAATTGATGACGTGTATGGATCAATCACACCATTCAATAGATGCATCCTCAACTAGTTCTGATGGTGAACGGGGCTATGTTCTCGTGATTGGGGCTACCAATAGACCGGATGACATTGACCCTGCTCTAAGGAGGGCTGGTCGATTTGATCGAGAGTTTGCTTTAGGTGTCCCCAATGAAGAGGCTAGAGCAGAGATTCTTTCTGTTCTTACATGCAATTTAAGGCTTGAAGGTTCTCTCGATCTTAGAAAAATAGCCAGGGCTACGCCTGGGTTTGTTGGAGCTGACTTGGCATACTTGGCTGATAAGGCTTGTCGTCTGGCCTTGGATGAAAGCATATGCAGGAAGAAGTTTGAATTCTCTAGGGAGATCATAAACAAGGAAGATATTAAACATTGGTGGAAGCAATCCTGGTCACGTGAAGAAGTAGAGAAACTATCAATTTGTACGAGCCATTTTGAGGAAGCAATAAAAATTGTTCAACCTTCATCAAGAAGAGAAGGCTTCTCTTCAATCCCTAATGTAAAATGGGAAGATGTAGGTGGGCTAGATCAATTACGAGAAGAATTTGATGAGCATATTGTTGGTCTTATAAAGTCTCCTGAGGATTATGAGGGATTTGGAATATCTCGAGAGTTTGGCTTTTTGCTGTATGGGCCCCCTGGGTGTGGTAAGACTTTGATTGCCAAGGCCGGTGCTGAAATTCTGAATAAATATGTTGGAGAAAGTGAACAGGCAGTTCTAGCACTTTTCAGACGTGCGAGGACGTGTTCGCCTTGTATAGTCTTTTTTGACGAAGTAGATGCATTGATAACACAACGGGGGAAAGAAGGGAGTTGGGTTGTTGAGCGTGTACTCACTCAGTTACTTGTAGAGTTAAATGGTGGGGAAGATCGACGTGGTGTTTTTGTCATTGGTGCGACAAATAGGCCACATGTCATCGACAGAGCCATGCTACGGCCTGGTCGGTTTGGCAAATGTATGTACGTTCCACTACCGGCACCTGTTGAACGAGGGTTAATTTTAAAAGCTATAGCAAGGAAATATCCAGTAGATGCTTCAGTAGACTTGATTGCACTTGGGCAGTCGGAGTCTTGCGAGAATTTTAGTGGAGCAGACCTTGCCGAACTGGTAAACGAGGCTGCGATGGCTGCTCGCCGAGAAAAACGAGCCCTTGGAAGAAAACAAACATCCGATAGTAGTAGTTTGGATGCAAAACAATGTAATAACATTAAGACCCATCATTTTGAGGTGGCACTCCGTAAAGTTACTCCATCAGTTACAGAGGAGGTAGGGCCGATGGAATGTTTCCTTTTGTCTTTTGATATCTAA 2496 44.35 EEMGRGRTGGGGLPTRRGRVELLSRIKSFKSNSQFPIIEDIVDYLRSTYRDYSRMKLRPFTKIVQETLTTSALSQQKTNQNSGISDSSSAPTRKKRRVEEDEEEGSEEEYCTQGIARKRTKVGDKGEQRLQRMEDVHLRRMRRTVHGRQSLSASSASDSNDDAEDESDEAVSTSEDAIFGEKVEPQFDLMKSMLRSSYMEINNPKLKSEKKILELEVAVENEVAKKINPANEGNRGEGTLKSGSKKEASNPFDGLEMKGKNGPMFSYLGGMDELLEELKKDVLLPLYHPHVPQGLGFKPTTGILLHGPPGCGKTTLAQAIANETGFPFYKISAAEVVSGISGSSEESIRELFSKAYKTAPSIVFIDEIEVIASKREKLQRETDKRIVTQLMTCMDQSHHSIDASSTSSDGERGYVLVIGATNRPDDIDPALRRAGRFDREFALGVPNEEARAEILSVLTCNLRLEGSLDLRKIARATPGFVGADLAYLADKACRLALDESICRKKFEFSREIINKEDIKHWWKQSWSREEVEKLSICTSHFEEAIKIVQPSSRREGFSSIPNVKWEDVGGLDQLREEFDEHIVGLIKSPEDYEGFGISREFGFLLYGPPGCGKTLIAKAGAEILNKYVGESEQAVLALFRRARTCSPCIVFFDEVDALITQRGKEGSWVVERVLTQLLVELNGGEDRRGVFVIGATNRPHVIDRAMLRPGRFGKCMYVPLPAPVERGLILKAIARKYPVDASVDLIALGQSESCENFSGADLAELVNEAAMAARREKRALGRKQTSDSSSLDAKQCNNIKTHHFEVALRKVTPSVTEEVGPMECFLLSFDI 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16719847 16725469 + Bda026596.1 Bda07g01391 10281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01391 831 Pfam ATPase family associated with various cellular activities (AAA) 604 719 IPR003959 GO:0005524|GO:0016887
Bda07g01391 831 Pfam ATPase family associated with various cellular activities (AAA) 303 443 IPR003959 GO:0005524|GO:0016887
Bda07g01391 831 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 118 818 - -
Bda07g01391 831 SMART AAA_5 299 447 IPR003593 -
Bda07g01391 831 SMART AAA_5 599 722 IPR003593 -
Bda07g01391 831 Pfam AAA+ lid domain 743 778 IPR041569 -
Bda07g01391 831 Pfam AAA+ lid domain 468 501 IPR041569 -
Bda07g01391 831 MobiDBLite consensus disorder prediction 72 179 - -
Bda07g01391 831 CDD AAA 602 720 - -
Bda07g01391 831 Pfam Nucleolin binding domain 22 69 IPR031996 -
Bda07g01391 831 ProSitePatterns AAA-protein family signature. 415 433 IPR003960 GO:0005524|GO:0016887
Bda07g01391 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 784 IPR027417 -
Bda07g01391 831 MobiDBLite consensus disorder prediction 228 255 - -
Bda07g01391 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 553 IPR027417 -
Bda07g01391 831 Gene3D - 257 444 IPR027417 -
Bda07g01391 831 MobiDBLite consensus disorder prediction 110 141 - -
Bda07g01391 831 MobiDBLite consensus disorder prediction 72 89 - -
Bda07g01391 831 Gene3D - 446 555 - -
Bda07g01391 831 Gene3D - 721 809 - -
Bda07g01391 831 Gene3D - 561 818 IPR027417 -
Bda07g01391 831 CDD AAA 269 444 - -
Bda07g01391 831 PANTHER AAA-FAMILY ATPASE 118 818 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01391 K14571 RIX7, NVL; ribosome biogenesis ATPase - csv:101216502 865.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01391 Bda-Chr7:16719847 Bda15g00824 Bda-Chr15:12504110 1.81E-23 dispersed
Bda07g01391 Bda-Chr7:16719847 Bda09g01446 Bda-Chr9:46246712 4.67E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003358 1 1 1 1 1 1 2 1 1 2 1 1 2 2 1 2 1 3 2 1 1 1 4 1 2 3 2 1 2 1 46