Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01413 ATGTCAGAGTCGCTAGATTGGGAAAAATGGTCTACGTTCTCCAACAAACGCTATGTCGAAGAAGCTGAGAAAATCTCTCGACCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTATAAAAAAATTGCAGCTCAGAAGGCTGCAGCCTTGCTAGAACTTGAGCAAGCTAATTCTGCGAATGCCGCCAAACCAGACCTCGCAGAAGAGGCCAATTCTCAGATAATTTTTTCAAATTCTATCGATTTCCATGAACAAGAACAACCAGTCGAATACTTTGGTGTTGAAGCAGATGTTAAAATGGATAAATTTGATGGCAAAAATGTGGAAGAAGATGAAACAGTTGCTGAACGTCAAGATTTCTCGACGAATCAAAGTCCTGAAATGGTTGAATTGTCCAGACAGCCTATCAGTTTCAATGACTTCAATCAGACTCCTTCAATGGAAAAACCTCTCTTAAAGGTAAAATTACAGAATATCCGAACCGATTTGTGTTGTTGCTCACTGTATAATTTCCTGCAGAATTTCATTCACGAGGATTCAGCAACCACTGGGAAGAACAAAACAGGAAATTCATCTTCAAAGTATTTACATTTCACCAAAGCATCCAAAATTCCATCTTCACCTGCTAGACAAACTACTCCGTCGTGGCATAATTTTGCAACTCCAAAGCAAAACAGAAAGAAGCCAGTAATAGATTCTGCGGATAAACGAAGATCAACCCAAAAATCTCTTGGCTTTTCAGCCAGTTTTACTCCCATTAGAGAACTTCACAAATTGACTTCGACAGTTATGAGGAAGATTGAACGTTCAAAAGCTGGTGCCAGTTTTACTAAAGCATCAAAAGACTGTTCAACTCCTCTAAGAACCCCAATAATGGTGCTTCCTTGCTCTTTTTTTTTCTACACATTAAATTCAAAACTCTTAAGCACCTGCACAAACAAAGCGAAGTCTCATTTTCCATCCACCCCTTTTAGCTTCAGAACTGAGGAAAGGGCGGCAAGAAGAAAGGAGGCAGGCCTTTACTTGATCAAACTTGAAGAGAAATTCATTGCTAATGACCTACAAAACTTACAACAACATACAAAACTAAAGCTTAATATCGTTGATGGAACCACTATTTTTCTATCATTCATGCAGGAAAAGGCAGAATTAGAAATGAAAAAACTGCGTCAAACTCTCTGCTTCAAAGCCAGACCTTTGCCTGATTTCTATAAAGAAAGAAAAGAGCAGCGGAATGAGATAAAGAAGGTTCCACTAACTCATCTTGAGTCTCCCAAACTTGGAAGAAAGCAGAATCCCAGCAGAAGAGAAGGTGCCGAACCTACTCAAAGACCATCTGTCAAGACCAGTACCGACAAAAGCAGCGTCCAAAGAAAGGCTCATTCCCTCAGATCCATAATGGCTGCTCACGAAAACACATCTCCAAATATTCAGCAATGA 1449 39.75 MSESLDWEKWSTFSNKRYVEEAEKISRPGSVAQKKAFFEAHYKKIAAQKAAALLELEQANSANAAKPDLAEEANSQIIFSNSIDFHEQEQPVEYFGVEADVKMDKFDGKNVEEDETVAERQDFSTNQSPEMVELSRQPISFNDFNQTPSMEKPLLKVKLQNIRTDLCCCSLYNFLQNFIHEDSATTGKNKTGNSSSKYLHFTKASKIPSSPARQTTPSWHNFATPKQNRKKPVIDSADKRRSTQKSLGFSASFTPIRELHKLTSTVMRKIERSKAGASFTKASKDCSTPLRTPIMVLPCSFFFYTLNSKLLSTCTNKAKSHFPSTPFSFRTEERAARRKEAGLYLIKLEEKFIANDLQNLQQHTKLKLNIVDGTTIFLSFMQEKAELEMKKLRQTLCFKARPLPDFYKERKEQRNEIKKVPLTHLESPKLGRKQNPSRREGAEPTQRPSVKTSTDKSSVQRKAHSLRSIMAAHENTSPNIQQ 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16988827 16991124 - Bda026622.1 Bda07g01413 10303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01413 482 MobiDBLite consensus disorder prediction 206 245 - -
Bda07g01413 482 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY 1 296 - -
Bda07g01413 482 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 308 473 IPR044216 -
Bda07g01413 482 MobiDBLite consensus disorder prediction 206 225 - -
Bda07g01413 482 MobiDBLite consensus disorder prediction 409 482 - -
Bda07g01413 482 MobiDBLite consensus disorder prediction 409 440 - -
Bda07g01413 482 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY 308 473 - -
Bda07g01413 482 Pfam Targeting protein for Xklp2 (TPX2) domain 327 366 IPR027329 -
Bda07g01413 482 Pfam Targeting protein for Xklp2 (TPX2) domain 382 416 IPR027329 -
Bda07g01413 482 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 1 296 IPR044216 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01413 - - - qsu:112007037 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01192 Bda-Chr7:14353312 Bda07g01413 Bda-Chr7:16988827 1.62E-10 dispersed
Bda07g01413 Bda-Chr7:16988827 Bda10g00957 Bda-Chr10:43882736 1.99E-19 dispersed
Bda13g01913 Bda-Chr13:43485377 Bda07g01413 Bda-Chr7:16988827 2.21E-07 dispersed
Bda07g01413 Bda-Chr7:16988827 Bda11g01248 Bda-Chr11:13010964 5.06E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1120 . . . . . . . Bma15g00249 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1109 Cone19ag1097 . . . . . . . . Bda07g01413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008997 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34