Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01441 ATGGTGATTCCTCGATCCTCCACTGTCTCAGTGAAATTAGCTCGAATACTCCTCAATCCCTCCGTTTCCTCATCATCTCCCTCACCATTTCTCCCTCAATCCGGATCAATTCGTTTTCTTTCTGCTTATTCTTTAAGAATTGTCGACGATCCAAACTTTAAGCTTGGTTCGAGTCGATCTTCTGCTGCCGCTTCGATTAATCACCCTTGCAGCTTCTCCACTTTGATTAATGGCGGTGGGGAGCAAACTCAGGATGCTATTGCTGAAGCGGTTGGTGGCAATCCAGATGAGATGAGCGGAAAAATTTCTCAAGACGCTAGAGAAATTTGTAAATTGCTTTCTGAAAATCCTAATTCTCCGATTAACGCCTTACTTGATAGGGCGTCAGTGAAGATTTCTCCGGCATTGGCTTTGGATGTGCTCCAAAAGCTGAGCAACGCCGGTCTTCTCGCGCTCGCATTCTTCCGATGGGGAGAGAAGCAGAAAGGGGTTAATTACGGCACGGAAAGCTACAACGCTTTAATCGAAACACTCGGAAAGATTAAACAGTTCAAGTTGATCTGGAATTTGGTGACGGAGATGAAAGGTAAGGGAATTTTGAGGAAAGAAACTTTTCATCTGATTTCTCGCAGATATGCTCGAGCTCGAAAGGTTAAAGAAGCCATTGAAGCAGTGGAGAGAATGGAAAAATTTAGTTTGCCATTAGAAGTTTCAGATTTCAATAGACTGATCGATACACTGAGTAAATCAAGAAACGTTGAGAGCGCACACCAGGTGTTCGATGAAATGAAAACCAGAAAATTCAAACCAGATATCAAATCCTACTTGATTCTACTGGAAGGATGGAGTCAAGAGAAAAATTTGTTGAAATTGAAGGAGGTATATAGAGAGATGACAGATGAAGGGTTCGATCCGGACGTAATAACTTATGGTATAATGATCAACGCACATTCAAAGGCGAAAAAATATGACGAAGGCATCAAATTGTTTCGAGAAATGGAGGCGAAGAACATAAAACCATCTCCTCACATATTCTGCACTTTGATTAACGGGTTGGGGTCGGAGAAGAGGCTGAATGAAGCCCTTGACTATTTTGAACTCTCGAAAGCTCATGGTTTTGCTCCGGAGGCACCCACGTACAATGCCGTCGTCGGAGCTTATTGCTGGTCGACGCGATTCAATGACGCATACAGAACAGTAGACGAGATGAGAAAATACAAAGTCGGTCCGAATTCTCGAACTTTCGATATAATCTTGCATCATCTAACAAAGGGTTGGAGAACGAAAGAAGCGTATTCACTCTACACGAGTATGAGTAACGATCAAGGGTGTGAGCCGTCTGTCAGCACATACGAAATTATCGTGAGGATGTTTTGCAAGGAGGAGAGGGTCGACATCGCGATGAGGGTTTGGGACGACATGAGGAGGAGAGGTGTTGTTCCGGTAATGCACATGTTTTCGACTTTGATTAATAGTCTGTGCCATGAAAATAAGTTGGACGAAGCTTGCAAATACTTTGAAGAAATGCTTGAGATAGGTATAAGGCCACCTGGCCAGATGTTTAGTAACTTGAAACAGTCTCTTGTTGATCAAGGAAGAAAAGAGATTGCTTCGGATTTGTCGAAAAAAATCGATAAACTTAGAAAAGCCCCATTTATCGATTGA 1665 42.76 MVIPRSSTVSVKLARILLNPSVSSSSPSPFLPQSGSIRFLSAYSLRIVDDPNFKLGSSRSSAAASINHPCSFSTLINGGGEQTQDAIAEAVGGNPDEMSGKISQDAREICKLLSENPNSPINALLDRASVKISPALALDVLQKLSNAGLLALAFFRWGEKQKGVNYGTESYNALIETLGKIKQFKLIWNLVTEMKGKGILRKETFHLISRRYARARKVKEAIEAVERMEKFSLPLEVSDFNRLIDTLSKSRNVESAHQVFDEMKTRKFKPDIKSYLILLEGWSQEKNLLKLKEVYREMTDEGFDPDVITYGIMINAHSKAKKYDEGIKLFREMEAKNIKPSPHIFCTLINGLGSEKRLNEALDYFELSKAHGFAPEAPTYNAVVGAYCWSTRFNDAYRTVDEMRKYKVGPNSRTFDIILHHLTKGWRTKEAYSLYTSMSNDQGCEPSVSTYEIIVRMFCKEERVDIAMRVWDDMRRRGVVPVMHMFSTLINSLCHENKLDEACKYFEEMLEIGIRPPGQMFSNLKQSLVDQGRKEIASDLSKKIDKLRKAPFID 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26664633 26666297 - Bda028268.1 Bda07g01441 10331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bda07g01441 554 Pfam PPR repeat family 240 281 IPR002885 -
Bda07g01441 554 Pfam PPR repeat family 379 422 IPR002885 -
Bda07g01441 554 Pfam PPR repeat family 305 352 IPR002885 -
Bda07g01441 554 Gene3D Tetratricopeptide repeat domain 108 233 IPR011990 GO:0005515
Bda07g01441 554 Gene3D Tetratricopeptide repeat domain 423 549 IPR011990 GO:0005515
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 240 272 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 485 516 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 379 411 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Bda07g01441 554 TIGRFAM PPR: pentatricopeptide repeat domain 450 481 IPR002885 -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Bda07g01441 554 Gene3D Tetratricopeptide repeat domain 238 422 IPR011990 GO:0005515
Bda07g01441 554 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 101 551 - -
Bda07g01441 554 PANTHER OS01G0505500 PROTEIN 101 551 - -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Bda07g01441 554 Pfam PPR repeat 443 475 IPR002885 -
Bda07g01441 554 Pfam PPR repeat 477 509 IPR002885 -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Bda07g01441 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Bda07g01441 554 Pfam PPR repeat 210 231 IPR002885 -
Bda07g01441 554 Pfam PPR repeat 170 199 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01441 - - - twl:120003081 689.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01441 Bda-Chr7:26664633 Bda12g00662 Bda-Chr12:31965534 5.21E-68 dispersed
Bda07g01441 Bda-Chr7:26664633 Bda04g00297 Bda-Chr4:46132914 1.37E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g404 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02033 . . . . Bda07g01441 . Bpe11g01613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012295 1 4 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29