Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01448 ATGGCTGATGATAGATTTCAAAATATTGCGGCAGAAAATAATGAATCAGATGATGGCTTACAAATTGTTACCTATTCTGGCGTCGTCGTAGAGCCGCATTCACAGCTCCCAAAGCCGGAGGCGCCACCCGGACTTTCCGATTCCCCTGCATCAAACGGTGACTTTAACTACCATAGATCAGAATCCATGACAGAAAACTTCACCCCGGCAATCGGGAAATTCATTCGTGAGAGAAGTAATACCTTCTCGGCAGCGATCGTAAAGACGCTCTCATCTCTCATAGACGAGAACGATGAAGTGGCTGACGACTCTAAGGCCAACTCCGGAGTAACGGAGTTCAATCTTTCTGGACTGAAGGTGATTGTCAAGCTAAAGCGTGACGAAAATAGATACAAAGAGCTCAAAGGCCGAGTCAGCTTCTTCTCGAAGTCGAATTGCAGGGATTGCACAGCTGTTCGGAGATTCTTTAGAGAAAAAGGACTCAAATACGTGGAGATAAACATCGATGTGTACCCTCAAAGAGAAGAGGAGCTGGTAAAATTAACCGGAGGTTCATCCGTTCCTCAGATATTCTTCAACGAAAAGTTATACGGAGGGTTGGTGGCTTTAAATTCTCTGAGAAACAGTGGAGAATTCGACAAGAGGTTAAAGGAGATGCTGAGTAGTAAATGTCCGGACGATGCTCCGGCGCCGCCTGTTTACGGTTTCGATGATCCCGAAGTGGGGTCCATAGACGAATTGATCGGCATCGTCAAATATTTACGGCAGAGATTACCTATTCAGGACCGCTTAATGAAGATGAAAATCATCAAAAACTGCTTCTCCGGGAGCGAGATGGTGGAGGTACTCATTCAACACTTGGATTGCGGCCGTCGAAAGGCAGTTGATTTGGGCAAGAAGCTGGCCCAGAGGCACTTCATCCAACATGTTTTCGGGGAAAATGGTTTTGTAGATGGCAACCATTTCTATCGTTTTCTTGAGCATGGACCTTCGATTCCCAAATGCTTTAATTTTCGTGGATCAACGAACGACTACGAGCCCAAGCCAGCCGCTGAGATTGGCCGCAAGCTTACCAAGATCATGTCTGCAATCCTCGACTCTTATGCCTCAGACGACAGACGCCACATTGATTATCTTGGCATCAGCAACAGCGAAGAATTCCGCAGGTATGTGAATCTGGTGCAAGAACTTCACCGGGTGAACCTCCACGAACTCTCCAAGGGTGAAAAGCTGGCATTCTTCTTGAATTTATATAATGCAATGGTAATCCATGGACTGATCAGATTAGGACACCCGCTTGCGTTCGAAAAAGTGAACCCAATAATTCACTTCGGACTCTGTGATGGAACAAGGTCAAGTCCCACTGTGAAGTTCTTCACAGCTCAAGCAGTAGAAAGTGAATTAAGATGCGCAGCTAGAGACTTCTTTCGGAACGGAGGAATTGAGGTGGATTTGGACAAAAGAACTGTTCATCTCTCTGGAATTATCAAGTGGGTAATTGGAGATTTTGGACAAGAAAAAGAAGTACTGAAATGGGTGATGAATTACTTGGATGCAACTAAAGCAGGTCTTTTGACACATCTTGTAGGAGACGGCTGCCCCGTTAACATCTCCTACCAACCTTATGATTGGTCTCTTAATTCCTACTCCCTCCAAATTCTGGGCTAA 1668 45.5 MADDRFQNIAAENNESDDGLQIVTYSGVVVEPHSQLPKPEAPPGLSDSPASNGDFNYHRSESMTENFTPAIGKFIRERSNTFSAAIVKTLSSLIDENDEVADDSKANSGVTEFNLSGLKVIVKLKRDENRYKELKGRVSFFSKSNCRDCTAVRRFFREKGLKYVEINIDVYPQREEELVKLTGGSSVPQIFFNEKLYGGLVALNSLRNSGEFDKRLKEMLSSKCPDDAPAPPVYGFDDPEVGSIDELIGIVKYLRQRLPIQDRLMKMKIIKNCFSGSEMVEVLIQHLDCGRRKAVDLGKKLAQRHFIQHVFGENGFVDGNHFYRFLEHGPSIPKCFNFRGSTNDYEPKPAAEIGRKLTKIMSAILDSYASDDRRHIDYLGISNSEEFRRYVNLVQELHRVNLHELSKGEKLAFFLNLYNAMVIHGLIRLGHPLAFEKVNPIIHFGLCDGTRSSPTVKFFTAQAVESELRCAARDFFRNGGIEVDLDKRTVHLSGIIKWVIGDFGQEKEVLKWVMNYLDATKAGLLTHLVGDGCPVNISYQPYDWSLNSYSLQILG 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26943135 26947268 + Bda028276.1 Bda07g01448 10338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01448 555 ProSiteProfiles Glutaredoxin domain profile. 126 223 - -
Bda07g01448 555 SMART DEP_3 254 327 IPR000591 GO:0035556
Bda07g01448 555 Gene3D Glutaredoxin 128 223 - -
Bda07g01448 555 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 16 432 - -
Bda07g01448 555 ProSiteProfiles DEP domain profile. 254 327 IPR000591 GO:0035556
Bda07g01448 555 MobiDBLite consensus disorder prediction 31 56 - -
Bda07g01448 555 Gene3D - 244 371 IPR036388 -
Bda07g01448 555 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 258 325 IPR000591 GO:0035556
Bda07g01448 555 SUPERFAMILY Winged helix DNA-binding domain 245 346 IPR036390 -
Bda07g01448 555 Pfam Glutaredoxin 139 196 IPR002109 -
Bda07g01448 555 CDD DEP 246 324 - -
Bda07g01448 555 Pfam Protein of unknown function, DUF547 403 431 IPR006869 -
Bda07g01448 555 Pfam Protein of unknown function, DUF547 434 475 IPR006869 -
Bda07g01448 555 PANTHER F26K24.21 PROTEIN 433 548 - -
Bda07g01448 555 PANTHER F26K24.21 PROTEIN 16 432 - -
Bda07g01448 555 CDD GRX_DEP 136 208 - -
Bda07g01448 555 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 433 548 - -
Bda07g01448 555 SUPERFAMILY Thioredoxin-like 136 218 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01448 - - - csv:101218879 752.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01448 Bda-Chr7:26943135 Bda13g01513 Bda-Chr13:38196449 7.78E-97 dispersed
Bda10g01168 Bda-Chr10:45691720 Bda07g01448 Bda-Chr7:26943135 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37