Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01453 ATGGGAAGCAGTAGCGGTGCTCTTATACCACACTTGCAGCTCGGACATTGCCACTGCCTCAAGTTTCTCCGCTCTGTTAAGCCGCACCAGTTTCATTTGAGGAGACCCAAATTCGGTTATGGCGGCTTGCGCAGTCGTTGGAGATTTGGTGGGTTTGTGTGTTCAGCGGTCGATGATGATGTGAGAGAGAAGAATCAAGAGATGGGTGAGGGGATTGGCTCGGCCATTGTCGAAGATAGGCTTGATCTTTCAGAAAGGTCAAGTGAAGCAGCAGAAAATTTCGAGAAAGACGATGGACAAAGTCCAATTTACAATTTTTTATACCCTAGTAAAGAGCTCCTTCCTGACGACAAAGAAATGAGTCTATTTGATCATCTAGAAGAATTGCGTCAGAGGATATTTGTATCCGTTTTGGCAGTTGGAGGTGCAATTATGGGATGCTTCGCATTTTCGAAAGAACTTATAAAGATTCTTGAGGCTCCTGTTAAAGAACAAGGTGTACGATTTCTGCAGCTTGCTCCTGGCGAGTTTTTCTTTACAACAATCAAGGTATCGGGTTATTGTGGACTTCTCGTAGGAAGCCCTGTTATTCTTTACGAGATTATAGCGTTTGTTCTTCCGGGCTTAACTAGAGCAGAGAGAAGATTTCTGGGGCCTATTGTCTTAGGTTCCTCGGTTCTATTTTATGCCGGCATCGTCTTCTCGTATTTGGTTCTCACACCTGCGGCTCTAAATTTTTTCGTCAGTTATGCAGAAGGAGCTGTGGAATCTTTGTGGTCCATTGATCAGTATTTTGAGTTCGTACTTGTTCTAATGTTCAGTACAGGCTTGTCTTTCCAGGTTCCAGTAATACAGTTTCTACTTGGACAACTTGGTCTAGTAACAGGGGACCAAATGCTCTCGGTTTGGAGATATGTAGTGGTCGGTGCAGTTGTGGCTGCAGCCATTGTCACACCCTCCACAGACCCTCTGACCCAAGTGCTTCTGGCTGCACCGTTGCTCGGTCTTTACTTTGGAGGTGCGTGGATGGTCAAGATCACGGGTCGGTGA 1050 45.71 MGSSSGALIPHLQLGHCHCLKFLRSVKPHQFHLRRPKFGYGGLRSRWRFGGFVCSAVDDDVREKNQEMGEGIGSAIVEDRLDLSERSSEAAENFEKDDGQSPIYNFLYPSKELLPDDKEMSLFDHLEELRQRIFVSVLAVGGAIMGCFAFSKELIKILEAPVKEQGVRFLQLAPGEFFFTTIKVSGYCGLLVGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIVFSYLVLTPAALNFFVSYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVTGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYFGGAWMVKITGR 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27015611 27017944 + Bda028281.1 Bda07g01453 10343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01453 349 TIGRFAM tatC: twin arginine-targeting protein translocase TatC 122 337 IPR002033 GO:0016021
Bda07g01453 349 Hamap Sec-independent protein translocase protein TatC [tatC]. 117 349 IPR002033 GO:0016021
Bda07g01453 349 PRINTS Bacterial Sec-independent translocation TatC protein family signature 213 239 IPR002033 GO:0016021
Bda07g01453 349 PRINTS Bacterial Sec-independent translocation TatC protein family signature 264 292 IPR002033 GO:0016021
Bda07g01453 349 PRINTS Bacterial Sec-independent translocation TatC protein family signature 195 213 IPR002033 GO:0016021
Bda07g01453 349 PRINTS Bacterial Sec-independent translocation TatC protein family signature 121 148 IPR002033 GO:0016021
Bda07g01453 349 ProSitePatterns TatC family signature. 264 283 IPR019820 -
Bda07g01453 349 PANTHER SEC-INDEPENDENT PERIPLASMIC PROTEIN TRANSLOCASE TATC-RELATED 47 349 - -
Bda07g01453 349 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 47 349 IPR002033 GO:0016021
Bda07g01453 349 Pfam Sec-independent protein translocase protein (TatC) 124 332 IPR002033 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01453 K03118 tatC; sec-independent protein translocase protein TatC - csv:101214128 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01162 Bda-Chr10:45660538 Bda07g01453 Bda-Chr7:27015611 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g383 . . . . . . . . Cmo04g01549 . . . Car04g01535 . Sed07g2127 . Cpe01g01319 Bhi07g01257 Tan04g0794 Cmetu10g0304 Lac13g0545 Hepe01g1152 . . Cla05g02263 Cam05g2433 Cec05g2451 Cco05g2497 Clacu05g2423 Cmu05g2290 Cre05g2408 Cone13ag0791 . . . Lsi04g00210 Csa05g02657 Chy10g01189 Cme10g00215 . . Bda07g01453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008998 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 34