Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01454 ATGGGGGGCGACGAGGAGAAGCCGATGGAGCAGAGCTTGTTGCCCGAACAGGAGGAAAAGCAAAGAGCCGACTCCATTTTAACATGGGTTTCTTTCTTTCAAGAGGTGAAAACGTTGGGGGGTATTGCAGCTCCCATGATTGTTGTGATTCTCTCTCAGTACTTGTTGCAGGTTATTTCTCTCATGATGGTGGGTCATCTTGGTGAGCTTGCGCTCTCTAGCACTGCCATAGCCATTTCTCTGTCTGGAGTTTCTGGGTTTAGTCTTCTGTTAGGCATGGCCAGTGCCCTTGAAACTCTTTGTGGACAAGCTTATGGAGCCAAGCAATATCAAAAACTTGGAACTCAGACCTATACTGCTATATTTTCTCTCATTTTAGTCTGTCTCCCTATATCTTTAATATGGATTTACATTGGGAAGATATTGATATTTCTTGGTCAAGATCCTCTTATTTCTCAAGAAGCCGGCAAGTTCATCGTTTGGCTTCTTCCCGCACTCTTCGCTTATGGGTGTCTTCAACCACTTGTGAGATATTTCCAGACACAGAGTTTGATCATTCCCATGCTTATAAGCTCGTGCATCGTCCTTTGTTTCCATATACCTCTCTCTTATGCGTTAGTGTTTAAGTCTGGACTTAATAATATCGGAGGAGCATTAGCAATCAGTATTTCAAATTGGTTGAATGTAATTTTGCTTGCACTCTACATGAAATTCTCTCCTTCCTGTGCAAAAACTCGTGGAGAAATTTCGATGGAGCTTTTCTATGGACTTCGAGAGTTCTTTCTCTTTGCAATACCGTCGGCAGTAATGATTTGCCTTGAATGGTGGTCATTTGAGCTGCTAATCTTACTATCTGGGCTTCTACCAAATCCAGAGCTTGAAACTTCAGTTCTATCAGTATGTCTCTCGACTATCTCAACACTCTATGCCATACCATATGGACTTGGTGCTGCTGGAAGTACTCGAGTTTCAAATGAGCTTGGGGCCGGGAACCCACAAGCTGCTCGAATAGCTACCTTTGCCGTGTTGTTTCTTGCAGTGGCAGAAACTAGTATAGTAAGCTCAGCACTCTTCGTAAGTCGGCGTGTTTTTGGCTACGTTTTCAGCAACGAGAAGGAAGTTGTGGATTATGTCACCACCATGGCTCCTCTTGTCTGTCTCTCTGTTATAATGGACAGCATACAAGGAGTTCTTTCAGGAATTGCTAGAGGATGTGGGTGGCAACACATAGGAGCTTATGTAAATCTTGGCGCGTTCTATCTTTGTGGAATTCCAGCTGCGGCATTTCTCGGTTTCTGGGTAAAGCTAAAAGGAAGAGGGCTATGGATAGGAATACAAATGGGGGCTTTTGTTCAGACCCTTCTGCTTTCCTTAGTTACGAGCCGTATTAAATGGGAAAAAGAGGCAAAGAAAGCAAGGGAGAGGATATTTCAGGGAATGTAG 1443 43.8 MGGDEEKPMEQSLLPEQEEKQRADSILTWVSFFQEVKTLGGIAAPMIVVILSQYLLQVISLMMVGHLGELALSSTAIAISLSGVSGFSLLLGMASALETLCGQAYGAKQYQKLGTQTYTAIFSLILVCLPISLIWIYIGKILIFLGQDPLISQEAGKFIVWLLPALFAYGCLQPLVRYFQTQSLIIPMLISSCIVLCFHIPLSYALVFKSGLNNIGGALAISISNWLNVILLALYMKFSPSCAKTRGEISMELFYGLREFFLFAIPSAVMICLEWWSFELLILLSGLLPNPELETSVLSVCLSTISTLYAIPYGLGAAGSTRVSNELGAGNPQAARIATFAVLFLAVAETSIVSSALFVSRRVFGYVFSNEKEVVDYVTTMAPLVCLSVIMDSIQGVLSGIARGCGWQHIGAYVNLGAFYLCGIPAAAFLGFWVKLKGRGLWIGIQMGAFVQTLLLSLVTSRIKWEKEAKKARERIFQGM 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27018607 27022204 - Bda028282.1 Bda07g01454 10344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01454 480 Pfam MatE 266 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda07g01454 480 Pfam MatE 45 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda07g01454 480 CDD MATE_eukaryotic 35 471 IPR045069 GO:0042910|GO:1990961
Bda07g01454 480 PANTHER PROTEIN DETOXIFICATION 31 472 - -
Bda07g01454 480 PANTHER MULTIDRUG RESISTANCE PROTEIN 31 472 - -
Bda07g01454 480 TIGRFAM matE: MATE efflux family protein 45 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01454 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - mnt:21412002 725.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01454 Bda11g00126 CCT
Bda07g01454 Bda11g00126 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00350 Bda-Chr3:2948684 Bda07g01454 Bda-Chr7:27018607 1.34E-149 dispersed
Bda07g01454 Bda-Chr7:27018607 Bda15g00832 Bda-Chr15:12658977 4.50E-151 dispersed
Bda07g01454 Bda-Chr7:27018607 Bda14g01477 Bda-Chr14:21882601 2.59E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g341 . . . Bda11g00126 . . . . Cmo04g01567 . . Cma18g01004 Car04g01549 Car18g00926 . Cpe09g00316 Cpe01g01333 Bhi07g01298 . . . . . . . . . . . . . Cone13ag0812 Cone19ag0818 . . Lsi04g00237 Csa05g02631 Chy10g01166 Cme10g00239 . Blo11g01031 Bda07g01454 Bda11g00126 . . Bma01g00415 Bma06g01049 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82