Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01457 ATGGAGTTGGGGAGCAGGAACGGACGGTCAACTCGCCACCGGCAGACTCGAAGACAACCACTTTCCTCAACTCATTCACCTCCCCTTCCTCTCCTCTTTTCCCGATCCCATTTCTCTCCTCTCCTGCGGCGGCGCTCACGTTATCGCTTTAACTTCTGGTGGGAGATTGGTGACTTGGGGAAGAGGAAGCTCGGGCAGCTGGGGCATGGCGATTTGGTTGGCTGTTTAGATCCAAAGCCTGTTATGGCCTTGAATAGCGTAGTCATTACTAATGTTTCTGCTGGATGGGGTCATTCTGGATTTGTTTCAGATGATGGCAATCTTTATACTTGTGGGGATGGCTCATTTGGTCAGCTAGGGCATGGTGATTATGGATCTCATTGCTCCCCTGCTAAAGTCTTGTTCTTCGCTGATATGTTTGTTGAACAGGTCGCATGTGGTATGCGCCATTCTTTGGCCTTGTTGAAAGGACGTGGAGGAAGTCAAGTTTATGGATTTGGAGTGGGGAAACGAGGTCAATTAGGTATTTCCAAGGGAATCAAATCAAGTAATACTCCAATAATTACTTGCGGATTTGAAGATGCAGAAATTTCAAGCATATCAGCAAATGGAGACCATAGTGCTGCGCTATCTTGTGAGTTACATCCATAA 651 47.16 MELGSRNGRSTRHRQTRRQPLSSTHSPPLPLLFSRSHFSPLLRRRSRYRFNFWWEIGDLGKRKLGQLGHGDLVGCLDPKPVMALNSVVITNVSAGWGHSGFVSDDGNLYTCGDGSFGQLGHGDYGSHCSPAKVLFFADMFVEQVACGMRHSLALLKGRGGSQVYGFGVGKRGQLGISKGIKSSNTPIITCGFEDAEISSISANGDHSAALSCELHP 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27053694 27055392 - Bda028285.1 Bda07g01457 10347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01457 216 Gene3D - 57 213 IPR009091 -
Bda07g01457 216 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 161 213 IPR000408 -
Bda07g01457 216 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 54 105 IPR000408 -
Bda07g01457 216 PANTHER OS01G0777800 PROTEIN 62 212 - -
Bda07g01457 216 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 212 - -
Bda07g01457 216 SUPERFAMILY RCC1/BLIP-II 60 211 IPR009091 -
Bda07g01457 216 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 144 154 IPR000408 -
Bda07g01457 216 MobiDBLite consensus disorder prediction 1 28 - -
Bda07g01457 216 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 106 157 IPR000408 -
Bda07g01457 216 Pfam Regulator of chromosome condensation (RCC1) repeat 162 210 IPR000408 -
Bda07g01457 216 Pfam Regulator of chromosome condensation (RCC1) repeat 60 101 IPR000408 -
Bda07g01457 216 Pfam Regulator of chromosome condensation (RCC1) repeat 105 154 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01457 - - - csv:101206976 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01457 Bda-Chr7:27053694 Bda10g00412 Bda-Chr10:36339597 1.17E-10 dispersed
Bda07g01457 Bda-Chr7:27053694 Bda04g00390 Bda-Chr4:50925195 1.10E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34