Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01466 ATGGCTTCCGAACCACAAGTTTCTGAAATTTCTGCTCTGTTCGAGAGGTTGATGAGTAACAGAGATCTTTCCATGTTCTTACCCTTTCTACTCGGATTCAATCAAGAAAACCCAGATCCAGAAAATGAAAACAGATCGAACCCTAGAGATAGAATCATCATCATCAATCCTTCTACTCAAGGTATGGTGGTGATTGAAGGTGCTTCTACCTTCGAATCCCTGCTTCGAGAATTGCGTAGCAAAAACGGTCAACCCCCTGCGTCAAAAGCGTCCATCGAAGCGATGCCAACTGAAGAAATACGAGAAGAGGGCGAGTGTACTATTTGCTTAGATGAGTTTGAAATCGGTAGTCGGGTGAAAAAAATGCCGTGTAACCATAAATTTCATGGTGATTGTATAAAAACGTGGCTAGAATTGCACGGGTCCTGCCCGATTTGTCGGTTTTTGTTGCCTGCTGATGAAGATGACGTTGGGAAGAAGAGTGATAGGGAGATTTGGGTCAGTTTTTCTTTCAATGGCGGAGGGAGAAATGGGGATTCGAACCACAGTTCTTCCAATGAGTTCGATCGTTCTTCCTCGGGATCTGAGGAACTGGAAGGCTTCCATCAGAAATGGTGCTTCCACTTCTCTTCACTCCAATGGCATGATTTTTCAACCCATCCCATTCATTTTCAGCTCGATGAATGTCTAGTGATGAAAACTCAACACTACTTTCTGCCGATTTTCGAGGATAGCCCTGTTGCTTCTCTTCTTCGATTCCAGAAATTTCCGATAATTCAAAAGAGCTTGCCATTGAAATTGTTCTCATTTTATTATTTTCATCATTATTGGAGTCCAATCCTGCAGTCTCTGCAGGTTTTGTGA 864 42.82 MASEPQVSEISALFERLMSNRDLSMFLPFLLGFNQENPDPENENRSNPRDRIIIINPSTQGMVVIEGASTFESLLRELRSKNGQPPASKASIEAMPTEEIREEGECTICLDEFEIGSRVKKMPCNHKFHGDCIKTWLELHGSCPICRFLLPADEDDVGKKSDREIWVSFSFNGGGRNGDSNHSSSNEFDRSSSGSEELEGFHQKWCFHFSSLQWHDFSTHPIHFQLDECLVMKTQHYFLPIFEDSPVASLLRFQKFPIIQKSLPLKLFSFYYFHHYWSPILQSLQVL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27327867 27329208 - Bda028302.1 Bda07g01466 10356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01466 287 ProSiteProfiles Zinc finger RING-type profile. 106 147 IPR001841 -
Bda07g01466 287 PANTHER - 8 162 - -
Bda07g01466 287 SUPERFAMILY RING/U-box 95 153 - -
Bda07g01466 287 SMART ring_2 106 146 IPR001841 -
Bda07g01466 287 Pfam Ring finger domain 105 147 IPR001841 -
Bda07g01466 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 152 IPR013083 -
Bda07g01466 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00265 Bda-Chr1:27207409 Bda07g01466 Bda-Chr7:27327867 3.33E-16 dispersed
Bda07g01466 Bda-Chr7:27327867 Bda10g01064 Bda-Chr10:44663236 1.88E-90 dispersed
Bda07g01466 Bda-Chr7:27327867 Bda02g00580 Bda-Chr2:46671597 1.42E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01466 - - zju:107429014 250.366