Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01469 ATGCAAATGGAAGTGCAAAGAAGACTGCATGAGCAGATTAAGGAAGAAAAACATTTGCAGATGAGGATTGAAGTTCAGGGGAAGTATTTACAGTCGATACTGAAAAGAGCACAAGAATCCCTCTCTGGGTATTGTTCATCGTCTCGAAGTGTGGATCTAGCAAAGGCTGAGCTCTCTCAGCTAGAATCAATGGTGAATACAGGCTGCAATATCTGTTCATTCACAAAACCTGCAGAGACTGCAGGATTGGACTCCAATAATGATGAAAATAATAAAATGAGAACAATTTCAATGGCAAGCTCTTTTGAATTATCGGAAATTTCTGGAATCGAAGAAGAGAAACAACAGGGCTATCCTCGAAAATCGGCAGAAAGTAGTGTTGAGTTTTCATCACTAGACATTCATCGAACTGAGAATGAATGGGATGGGTTGAAAAATCATGCCATTGGAGTGAAGAGAAGTGGAAGCACCATTTCTGATGGAAGCTGCAGTGATATGAAGATGAAGAAGTTCAGATTATCAGAGATGATTGACTTGAACAGCTAG 546 39.93 MQMEVQRRLHEQIKEEKHLQMRIEVQGKYLQSILKRAQESLSGYCSSSRSVDLAKAELSQLESMVNTGCNICSFTKPAETAGLDSNNDENNKMRTISMASSFELSEISGIEEEKQQGYPRKSAESSVEFSSLDIHRTENEWDGLKNHAIGVKRSGSTISDGSCSDMKMKKFRLSEMIDLNS 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27375516 27376135 - Bda028305.2 Bda07g01469 10359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01469 181 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 168 IPR044848 GO:0003700
Bda07g01469 181 Pfam MYB-CC type transfactor, LHEQLE motif 1 39 IPR025756 -
Bda07g01469 181 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR23-LIKE ISOFORM X1 1 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01469 - - - pper:18789341 159.458
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01469 Bda11g01213 CCT
Bda07g01469 Bda11g01213 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01469 Bda-Chr7:27375516 Bda05g01256 Bda-Chr5:60368937 3.26E-17 dispersed
Bda11g01213 Bda-Chr11:12502897 Bda07g01469 Bda-Chr7:27375516 2.47E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g923 . . . Bda11g01213 . . Bma14g01649 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0942 Cone6ag0578 Cone9ag0583 . . . . . Blo11g00775 Bda07g01469 Bda11g01213 Bpe11g01644 . . Bma06g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41